Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03400 and PGA1_c03410 are separated by 298 nucleotides PGA1_c03410 and PGA1_c03420 are separated by 121 nucleotides
PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) <small>(from data)</small>, at 326,480 to 327,655
_c03400
PGA1_c03410: PGA1_c03410 - EAL domain-containing protein, at 327,954 to 328,796
_c03410
PGA1_c03420: PGA1_c03420 - putative C-5 sterol desaturase, at 328,918 to 329,847
_c03420
Position (kb) 327
328
329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 327.026 kb on + strand, within PGA1_c03400 at 327.034 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.147 kb on - strand, within PGA1_c03400 at 327.178 kb on - strand, within PGA1_c03400 at 327.179 kb on + strand, within PGA1_c03400 at 327.268 kb on - strand, within PGA1_c03400 at 327.278 kb on - strand, within PGA1_c03400 at 327.326 kb on + strand, within PGA1_c03400 at 327.329 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.382 kb on + strand, within PGA1_c03400 at 327.390 kb on + strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.400 kb on + strand, within PGA1_c03400 at 327.407 kb on + strand, within PGA1_c03400 at 327.431 kb on - strand, within PGA1_c03400 at 327.438 kb on + strand, within PGA1_c03400 at 327.443 kb on + strand, within PGA1_c03400 at 327.463 kb on + strand, within PGA1_c03400 at 327.483 kb on - strand, within PGA1_c03400 at 327.547 kb on - strand at 327.557 kb on - strand at 327.671 kb on + strand at 327.679 kb on - strand at 327.679 kb on - strand at 327.701 kb on - strand at 327.703 kb on + strand at 327.711 kb on - strand at 327.711 kb on - strand at 327.755 kb on + strand at 327.767 kb on + strand at 327.767 kb on - strand at 327.774 kb on + strand at 327.791 kb on + strand at 327.796 kb on + strand at 327.799 kb on - strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.844 kb on - strand at 327.848 kb on + strand at 327.854 kb on - strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.891 kb on + strand at 327.900 kb on - strand at 327.921 kb on - strand at 327.940 kb on + strand at 327.940 kb on - strand at 327.942 kb on + strand at 327.943 kb on - strand at 327.950 kb on - strand at 327.958 kb on - strand at 327.960 kb on - strand at 327.961 kb on + strand at 327.991 kb on - strand at 328.002 kb on + strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.012 kb on + strand at 328.026 kb on + strand at 328.034 kb on - strand at 328.070 kb on + strand, within PGA1_c03410 at 328.316 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.324 kb on - strand, within PGA1_c03410 at 328.347 kb on + strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.441 kb on + strand, within PGA1_c03410 at 328.453 kb on - strand, within PGA1_c03410 at 328.463 kb on + strand, within PGA1_c03410 at 328.502 kb on + strand, within PGA1_c03410 at 328.504 kb on - strand, within PGA1_c03410 at 328.507 kb on + strand, within PGA1_c03410 at 328.517 kb on + strand, within PGA1_c03410 at 328.599 kb on + strand, within PGA1_c03410 at 328.614 kb on - strand, within PGA1_c03410 at 328.616 kb on + strand, within PGA1_c03410 at 328.633 kb on + strand, within PGA1_c03410 at 328.730 kb on + strand at 328.738 kb on - strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.807 kb on - strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.829 kb on - strand at 328.829 kb on - strand at 328.829 kb on - strand at 328.834 kb on - strand at 328.839 kb on - strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.849 kb on - strand at 328.849 kb on - strand at 328.915 kb on + strand at 328.916 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.921 kb on + strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.942 kb on - strand at 328.944 kb on + strand at 328.949 kb on + strand at 328.952 kb on - strand at 328.980 kb on + strand at 328.980 kb on + strand at 328.988 kb on - strand at 329.011 kb on + strand, within PGA1_c03420 at 329.099 kb on - strand, within PGA1_c03420 at 329.115 kb on + strand, within PGA1_c03420 at 329.135 kb on - strand, within PGA1_c03420 at 329.139 kb on + strand, within PGA1_c03420 at 329.143 kb on - strand, within PGA1_c03420 at 329.154 kb on - strand, within PGA1_c03420 at 329.169 kb on - strand, within PGA1_c03420 at 329.169 kb on - strand, within PGA1_c03420 at 329.203 kb on - strand, within PGA1_c03420 at 329.217 kb on + strand, within PGA1_c03420 at 329.217 kb on + strand, within PGA1_c03420 at 329.269 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.284 kb on + strand, within PGA1_c03420 at 329.295 kb on + strand, within PGA1_c03420 at 329.295 kb on + strand, within PGA1_c03420 at 329.303 kb on - strand, within PGA1_c03420 at 329.305 kb on + strand, within PGA1_c03420 at 329.324 kb on + strand, within PGA1_c03420 at 329.344 kb on - strand, within PGA1_c03420 at 329.358 kb on - strand, within PGA1_c03420 at 329.388 kb on + strand, within PGA1_c03420 at 329.404 kb on + strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.441 kb on - strand, within PGA1_c03420 at 329.447 kb on + strand, within PGA1_c03420 at 329.514 kb on + strand, within PGA1_c03420 at 329.520 kb on - strand, within PGA1_c03420 at 329.522 kb on + strand, within PGA1_c03420 at 329.547 kb on + strand, within PGA1_c03420 at 329.552 kb on + strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.606 kb on + strand, within PGA1_c03420 at 329.629 kb on - strand, within PGA1_c03420 at 329.682 kb on + strand, within PGA1_c03420 at 329.714 kb on - strand, within PGA1_c03420 at 329.721 kb on - strand, within PGA1_c03420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 327,026 + PGA1_c03400 0.46 +1.9 327,034 - PGA1_c03400 0.47 +1.2 327,058 - PGA1_c03400 0.49 +0.3 327,058 - PGA1_c03400 0.49 +0.7 327,102 + PGA1_c03400 0.53 +1.5 327,102 + PGA1_c03400 0.53 +0.7 327,147 - PGA1_c03400 0.57 -0.1 327,178 - PGA1_c03400 0.59 +0.6 327,179 + PGA1_c03400 0.59 -0.9 327,268 - PGA1_c03400 0.67 +0.8 327,278 - PGA1_c03400 0.68 -1.7 327,326 + PGA1_c03400 0.72 +0.7 327,329 - PGA1_c03400 0.72 +1.2 327,334 - PGA1_c03400 0.73 +0.5 327,334 - PGA1_c03400 0.73 +1.5 327,334 - PGA1_c03400 0.73 -0.8 327,382 + PGA1_c03400 0.77 -0.7 327,390 + PGA1_c03400 0.77 -0.6 327,390 - PGA1_c03400 0.77 +0.3 327,390 - PGA1_c03400 0.77 +0.6 327,400 + PGA1_c03400 0.78 -0.2 327,407 + PGA1_c03400 0.79 +0.1 327,431 - PGA1_c03400 0.81 -1.6 327,438 + PGA1_c03400 0.81 +0.8 327,443 + PGA1_c03400 0.82 +0.3 327,463 + PGA1_c03400 0.84 -0.1 327,483 - PGA1_c03400 0.85 -0.3 327,547 - +0.0 327,557 - -0.6 327,671 + +0.5 327,679 - -0.5 327,679 - -0.9 327,701 - +1.1 327,703 + -0.5 327,711 - +0.1 327,711 - +0.2 327,755 + +0.8 327,767 + +0.3 327,767 - -0.6 327,774 + -0.2 327,791 + +0.5 327,796 + -1.1 327,799 - +0.3 327,801 + +0.3 327,801 + -0.1 327,801 + -0.6 327,801 + -0.0 327,801 + -0.6 327,801 + -0.0 327,801 + -0.2 327,801 + +1.0 327,801 + -0.1 327,809 - -1.3 327,809 - -1.6 327,809 - +0.2 327,809 - +1.4 327,844 - -0.3 327,848 + +0.4 327,854 - +0.6 327,881 + -0.9 327,881 + -1.4 327,881 + +0.2 327,881 + -0.0 327,881 + -0.0 327,881 + +0.8 327,881 + +0.3 327,881 + +0.6 327,889 - +0.5 327,889 - -0.3 327,889 - +0.6 327,889 - -1.3 327,889 - +0.5 327,889 - +0.5 327,889 - -0.2 327,889 - +0.2 327,889 - -0.7 327,889 - +0.1 327,889 - -1.3 327,889 - +0.1 327,889 - +0.1 327,889 - -0.4 327,889 - -1.3 327,889 - +0.1 327,889 - +0.1 327,891 + -0.1 327,900 - +0.2 327,921 - -0.3 327,940 + +0.9 327,940 - +0.2 327,942 + -0.0 327,943 - -0.4 327,950 - -0.1 327,958 - -1.2 327,960 - -0.8 327,961 + -0.5 327,991 - +0.3 328,002 + -0.4 328,010 - -0.4 328,010 - -0.8 328,010 - +1.3 328,010 - -1.4 328,012 + -1.3 328,026 + +1.5 328,034 - -1.9 328,070 + PGA1_c03410 0.14 -0.8 328,316 + PGA1_c03410 0.43 -1.7 328,321 + PGA1_c03410 0.44 -2.8 328,321 + PGA1_c03410 0.44 -1.7 328,324 - PGA1_c03410 0.44 -0.6 328,347 + PGA1_c03410 0.47 +0.6 328,350 - PGA1_c03410 0.47 -1.7 328,350 - PGA1_c03410 0.47 -2.5 328,441 + PGA1_c03410 0.58 +0.4 328,453 - PGA1_c03410 0.59 -2.6 328,463 + PGA1_c03410 0.60 -1.1 328,502 + PGA1_c03410 0.65 -1.0 328,504 - PGA1_c03410 0.65 -1.4 328,507 + PGA1_c03410 0.66 -0.7 328,517 + PGA1_c03410 0.67 -0.2 328,599 + PGA1_c03410 0.77 -0.6 328,614 - PGA1_c03410 0.78 -1.6 328,616 + PGA1_c03410 0.79 -0.1 328,633 + PGA1_c03410 0.81 -0.5 328,730 + -1.1 328,738 - +0.1 328,798 + -1.2 328,798 + +1.0 328,798 + +0.6 328,798 + +0.0 328,798 + +0.9 328,798 + -1.6 328,806 - +0.7 328,806 - -0.8 328,806 - -1.1 328,806 - +0.5 328,806 - -0.7 328,807 - -0.4 328,816 + -3.0 328,816 + -3.6 328,816 + -2.3 328,816 + -1.6 328,816 + -1.0 328,824 - -0.9 328,824 - -1.1 328,824 - -1.5 328,824 - -0.0 328,824 - -1.1 328,824 - -1.3 328,824 - -0.3 328,824 - -2.5 328,829 - -0.7 328,829 - +0.8 328,829 - -1.1 328,834 - +0.7 328,839 - +2.3 328,841 + -0.7 328,841 + +0.3 328,841 + -1.0 328,841 + +1.1 328,849 - +0.8 328,849 - -2.0 328,915 + +2.0 328,916 - +1.3 328,918 - +1.2 328,918 - -1.3 328,918 - +0.6 328,918 - -1.4 328,921 + +0.7 328,923 - +0.9 328,923 - -0.9 328,923 - +1.3 328,923 - +0.6 328,923 - -1.0 328,942 - +0.6 328,944 + -2.7 328,949 + +0.5 328,952 - +0.2 328,980 + -1.4 328,980 + -0.2 328,988 - -0.5 329,011 + PGA1_c03420 0.10 +0.7 329,099 - PGA1_c03420 0.19 -0.4 329,115 + PGA1_c03420 0.21 -2.7 329,135 - PGA1_c03420 0.23 +1.5 329,139 + PGA1_c03420 0.24 -0.6 329,143 - PGA1_c03420 0.24 -0.1 329,154 - PGA1_c03420 0.25 -1.8 329,169 - PGA1_c03420 0.27 +1.8 329,169 - PGA1_c03420 0.27 -0.4 329,203 - PGA1_c03420 0.31 +0.1 329,217 + PGA1_c03420 0.32 +0.1 329,217 + PGA1_c03420 0.32 -1.3 329,269 + PGA1_c03420 0.38 -0.2 329,274 + PGA1_c03420 0.38 +0.8 329,274 + PGA1_c03420 0.38 -0.1 329,274 + PGA1_c03420 0.38 +1.1 329,284 + PGA1_c03420 0.39 +0.3 329,295 + PGA1_c03420 0.41 +1.5 329,295 + PGA1_c03420 0.41 -0.5 329,303 - PGA1_c03420 0.41 -0.7 329,305 + PGA1_c03420 0.42 +1.2 329,324 + PGA1_c03420 0.44 +0.2 329,344 - PGA1_c03420 0.46 +0.0 329,358 - PGA1_c03420 0.47 -0.3 329,388 + PGA1_c03420 0.51 -0.8 329,404 + PGA1_c03420 0.52 -4.0 329,412 - PGA1_c03420 0.53 +0.6 329,412 - PGA1_c03420 0.53 -1.0 329,441 - PGA1_c03420 0.56 +1.5 329,447 + PGA1_c03420 0.57 +0.5 329,514 + PGA1_c03420 0.64 +0.9 329,520 - PGA1_c03420 0.65 +0.3 329,522 + PGA1_c03420 0.65 +0.9 329,547 + PGA1_c03420 0.68 +0.0 329,552 + PGA1_c03420 0.68 +0.1 329,558 - PGA1_c03420 0.69 -1.1 329,558 - PGA1_c03420 0.69 -0.5 329,606 + PGA1_c03420 0.74 +1.1 329,629 - PGA1_c03420 0.76 -1.8 329,682 + PGA1_c03420 0.82 +1.1 329,714 - PGA1_c03420 0.86 -0.0 329,721 - PGA1_c03420 0.86 -1.3
Or see this region's nucleotide sequence