Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32420

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.00002 mg/ml
3,397,760	+		PGA1_c32410	0.43	+1.4
3,397,779	+		PGA1_c32410	0.44	+0.1
3,397,779	+		PGA1_c32410	0.44	-0.3
3,397,825	+		PGA1_c32410	0.47	-0.6
3,397,833	-		PGA1_c32410	0.48	-0.4
3,397,844	+		PGA1_c32410	0.48	-0.1
3,397,849	+		PGA1_c32410	0.49	+0.9
3,397,857	-		PGA1_c32410	0.49	+0.3
3,397,872	+		PGA1_c32410	0.50	+1.6
3,397,946	+		PGA1_c32410	0.55	-0.1
3,397,969	-		PGA1_c32410	0.57	+1.6
3,397,979	-		PGA1_c32410	0.57	-0.9
3,398,019	-		PGA1_c32410	0.60	-1.0
3,398,021	-		PGA1_c32410	0.60	-0.1
3,398,141	+		PGA1_c32410	0.68	+0.4
3,398,149	-		PGA1_c32410	0.69	-0.8
3,398,198	-		PGA1_c32410	0.72	-2.0
3,398,203	-		PGA1_c32410	0.72	-2.1
3,398,254	+		PGA1_c32410	0.76	+0.2
3,398,309	-		PGA1_c32410	0.80	-1.1
3,398,309	-		PGA1_c32410	0.80	+0.4
3,398,333	+		PGA1_c32410	0.81	-0.8
3,398,338	+		PGA1_c32410	0.82	-2.1
3,398,338	+		PGA1_c32410	0.82	+0.3
3,398,339	+		PGA1_c32410	0.82	-0.4
3,398,347	-		PGA1_c32410	0.82	-1.5
3,398,347	-		PGA1_c32410	0.82	-0.1
3,398,365	-		PGA1_c32410	0.83	+0.2
3,398,365	-		PGA1_c32410	0.83	+0.9
3,398,381	+		PGA1_c32410	0.84	-0.6
3,398,383	+		PGA1_c32410	0.85	+0.5
3,398,383	+		PGA1_c32410	0.85	+1.8
3,398,383	+		PGA1_c32410	0.85	+0.5
3,398,383	+		PGA1_c32410	0.85	-2.1
3,398,383	+		PGA1_c32410	0.85	+1.2
3,398,383	+		PGA1_c32410	0.85	+0.7
3,398,391	-		PGA1_c32410	0.85	+0.5
3,398,391	-		PGA1_c32410	0.85	+0.4
3,398,391	-		PGA1_c32410	0.85	-1.8
3,398,412	-		PGA1_c32410	0.86	-1.9
3,398,452	-		PGA1_c32410	0.89	+0.8
3,398,452	-		PGA1_c32410	0.89	-0.3
3,398,452	-		PGA1_c32410	0.89	+0.6
3,398,504	+				+0.8
3,398,504	+				+0.4
3,398,504	+				+1.4
3,398,512	-				-0.2
3,398,512	-				-1.0
3,398,512	-				+0.7
3,398,537	-				+0.3
3,398,595	-				-0.5
3,398,653	+				+0.4
3,398,654	-				-0.6
3,398,656	-				+0.7
3,398,658	+				-0.2
3,398,659	+				+1.0
3,398,659	+				+0.1
3,398,689	-				+0.9
3,398,700	+				-1.3
3,398,710	+				+0.7
3,398,710	+				-1.9
3,398,710	+				-0.1
3,398,710	+				+1.5
3,398,710	+				-0.3
3,398,710	+				+0.2
3,398,718	-				-0.9
3,398,718	-				+0.8
3,398,718	-				-0.6
3,398,718	-				-3.0
3,398,758	-				-0.1
3,398,777	+		PGA1_c32420	0.10	+0.1
3,398,777	+		PGA1_c32420	0.10	-0.1
3,398,777	+		PGA1_c32420	0.10	+0.2
3,398,787	+		PGA1_c32420	0.12	+1.4
3,398,795	-		PGA1_c32420	0.14	+0.5
3,398,808	+		PGA1_c32420	0.16	-1.5
3,398,828	+		PGA1_c32420	0.20	-0.9
3,398,846	-		PGA1_c32420	0.24	-0.2
3,398,854	+		PGA1_c32420	0.25	+0.1
3,398,864	-		PGA1_c32420	0.27	+0.0
3,398,875	+		PGA1_c32420	0.30	+1.3
3,398,890	+		PGA1_c32420	0.33	+0.1
3,398,913	+		PGA1_c32420	0.37	-0.4
3,398,976	+		PGA1_c32420	0.50	-0.8
3,398,986	+		PGA1_c32420	0.51	-0.6
3,398,986	+		PGA1_c32420	0.51	+0.1
3,398,993	+		PGA1_c32420	0.53	-0.9
3,398,999	+		PGA1_c32420	0.54	-2.1
3,399,001	-		PGA1_c32420	0.54	+0.5
3,399,041	+		PGA1_c32420	0.62	+0.7
3,399,049	-		PGA1_c32420	0.64	+0.6
3,399,059	+		PGA1_c32420	0.66	-0.1
3,399,135	+		PGA1_c32420	0.81	-0.1
3,399,135	+		PGA1_c32420	0.81	-1.0
3,399,137	-		PGA1_c32420	0.81	-0.1
3,399,177	-		PGA1_c32420	0.89	-0.3
3,399,177	-		PGA1_c32420	0.89	-1.4
3,399,241	+				-2.1
3,399,241	+				-1.1
3,399,273	-				-0.7
3,399,290	-				+0.5
3,399,298	+				-0.3
3,399,300	-				+0.9
3,399,300	-				+0.7
3,399,356	-				-0.4
3,399,363	+				-0.2
3,399,379	+		PGA1_c32430	0.11	-0.5
3,399,387	-		PGA1_c32430	0.12	+0.4
3,399,395	+		PGA1_c32430	0.14	-0.4
3,399,408	-		PGA1_c32430	0.16	-1.4
3,399,427	+		PGA1_c32430	0.19	+0.8
3,399,464	-		PGA1_c32430	0.26	+0.2
3,399,493	-		PGA1_c32430	0.31	+0.9
3,399,529	+		PGA1_c32430	0.38	+0.3
3,399,530	-		PGA1_c32430	0.38	+0.1
3,399,530	-		PGA1_c32430	0.38	-0.6
3,399,533	+		PGA1_c32430	0.38	-0.4
3,399,548	+		PGA1_c32430	0.41	+0.0
3,399,550	+		PGA1_c32430	0.41	-0.6
3,399,576	-		PGA1_c32430	0.46	+1.8
3,399,588	-		PGA1_c32430	0.48	+0.9
3,399,599	-		PGA1_c32430	0.50	-0.3
3,399,625	+		PGA1_c32430	0.55	+2.1
3,399,633	+		PGA1_c32430	0.56	-0.4
3,399,686	+		PGA1_c32430	0.66	+2.7
3,399,699	-		PGA1_c32430	0.68	+1.5
3,399,699	-		PGA1_c32430	0.68	-0.1
3,399,699	-		PGA1_c32430	0.68	+0.6
3,399,753	-		PGA1_c32430	0.78	-1.8
3,399,763	-		PGA1_c32430	0.80	+0.5
3,399,777	+		PGA1_c32430	0.82	-1.1
3,399,777	+		PGA1_c32430	0.82	-0.7
3,399,783	-		PGA1_c32430	0.83	-1.0
3,399,840	-				-0.4
3,399,884	+				+0.5
3,399,884	+				-0.2
3,399,884	+				+1.4
3,399,892	-				-2.6
3,399,892	-				+0.3
3,399,892	-				+1.9
3,399,892	-				-0.4
3,399,892	-				+0.6
3,399,892	-				-0.5
3,399,892	-				+0.6
3,399,892	-				-1.1
3,399,927	+				-1.1
3,399,956	+				+0.3
3,400,019	+				+0.8
3,400,036	-				-2.8
3,400,103	+				+1.0
3,400,160	+				-0.1
3,400,168	-				+2.4