Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23000

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.00002 mg/ml
2,384,656	-				-1.1
2,384,676	-				+1.0
2,384,676	-				+0.8
2,384,875	+		PGA1_c22990	0.13	+0.3
2,384,875	+		PGA1_c22990	0.13	+0.1
2,384,952	-		PGA1_c22990	0.26	+1.9
2,384,965	-		PGA1_c22990	0.28	-1.0
2,385,040	-		PGA1_c22990	0.41	+1.7
2,385,060	+		PGA1_c22990	0.45	-1.5
2,385,142	+		PGA1_c22990	0.58	+0.1
2,385,179	-		PGA1_c22990	0.65	+0.7
2,385,198	+		PGA1_c22990	0.68	-1.4
2,385,216	+		PGA1_c22990	0.71	+0.5
2,385,216	+		PGA1_c22990	0.71	-0.0
2,385,229	+		PGA1_c22990	0.73	+1.9
2,385,229	+		PGA1_c22990	0.73	-1.4
2,385,239	+		PGA1_c22990	0.75	+1.7
2,385,240	+		PGA1_c22990	0.75	-0.7
2,385,286	+		PGA1_c22990	0.83	-0.2
2,385,376	+				-0.3
2,385,514	-				+0.9
2,385,549	+				-0.6
2,385,552	-				-1.8
2,385,552	-				+1.1
2,385,559	-				+0.4
2,385,571	+				+1.0
2,385,686	-		PGA1_c23000	0.44	-0.3
2,385,740	-		PGA1_c23000	0.63	+1.1
2,385,740	-		PGA1_c23000	0.63	+1.1
2,385,850	+				-0.0
2,385,858	-		PGA1_c23010	0.12	-0.1
2,385,858	-		PGA1_c23010	0.12	+1.7
2,385,858	-		PGA1_c23010	0.12	+0.1
2,385,890	+		PGA1_c23010	0.27	-2.1
2,385,914	+		PGA1_c23010	0.37	+1.4
2,385,922	-		PGA1_c23010	0.41	+0.4
2,385,961	+		PGA1_c23010	0.58	-1.1
2,385,961	+		PGA1_c23010	0.58	+0.8
2,385,961	+		PGA1_c23010	0.58	-0.3
2,385,961	+		PGA1_c23010	0.58	-0.1
2,385,969	-		PGA1_c23010	0.62	-0.1
2,385,969	-		PGA1_c23010	0.62	+0.3
2,385,969	-		PGA1_c23010	0.62	-0.5
2,386,016	+		PGA1_c23010	0.83	-0.5
2,386,042	+				-1.1
2,386,049	+				-0.0
2,386,050	-				-0.1
2,386,052	+				-0.3
2,386,072	-		PGA1_c23020	0.10	-0.4
2,386,083	+		PGA1_c23020	0.16	+0.7
2,386,083	+		PGA1_c23020	0.16	-1.4
2,386,091	-		PGA1_c23020	0.20	-0.0
2,386,091	-		PGA1_c23020	0.20	+2.3
2,386,091	-		PGA1_c23020	0.20	+0.2
2,386,091	-		PGA1_c23020	0.20	-0.7
2,386,091	-		PGA1_c23020	0.20	-0.7
2,386,108	-		PGA1_c23020	0.28	-0.3
2,386,110	+		PGA1_c23020	0.29	-1.1
2,386,110	+		PGA1_c23020	0.29	+0.8
2,386,118	-		PGA1_c23020	0.33	-1.5
2,386,144	+		PGA1_c23020	0.46	+1.7
2,386,144	+		PGA1_c23020	0.46	+0.3
2,386,152	-		PGA1_c23020	0.50	+0.3
2,386,152	-		PGA1_c23020	0.50	+0.6
2,386,152	-		PGA1_c23020	0.50	+0.3
2,386,152	-		PGA1_c23020	0.50	-0.4
2,386,152	-		PGA1_c23020	0.50	+0.1
2,386,152	-		PGA1_c23020	0.50	-0.5
2,386,202	-		PGA1_c23020	0.74	+0.1
2,386,269	+				-0.0
2,386,269	+				-0.6
2,386,269	+				+0.2
2,386,269	+				+1.8
2,386,274	+				-1.0
2,386,274	+				-0.7
2,386,277	-				-0.1
2,386,277	-				+0.1
2,386,277	-				-0.2
2,386,277	-				+0.2
2,386,277	-				+0.2
2,386,277	-				-1.1
2,386,282	-				-1.2
2,386,349	+		PGA1_c23030	0.11	+0.7
2,386,357	-		PGA1_c23030	0.12	+0.2
2,386,366	-		PGA1_c23030	0.13	+1.1
2,386,366	-		PGA1_c23030	0.13	+0.6
2,386,366	-		PGA1_c23030	0.13	+1.8
2,386,408	+		PGA1_c23030	0.18	-0.4
2,386,413	+		PGA1_c23030	0.18	+0.3
2,386,416	-		PGA1_c23030	0.19	+3.3
2,386,424	-		PGA1_c23030	0.20	+0.2
2,386,457	+		PGA1_c23030	0.23	+0.4
2,386,464	+		PGA1_c23030	0.24	+0.2
2,386,464	+		PGA1_c23030	0.24	-1.7
2,386,464	+		PGA1_c23030	0.24	+1.1
2,386,472	-		PGA1_c23030	0.25	+1.5
2,386,472	-		PGA1_c23030	0.25	+1.5
2,386,525	+		PGA1_c23030	0.31	+1.2
2,386,543	-		PGA1_c23030	0.33	+0.1
2,386,562	-		PGA1_c23030	0.35	-1.2
2,386,562	-		PGA1_c23030	0.35	+0.2
2,386,572	+		PGA1_c23030	0.37	-1.7
2,386,607	-		PGA1_c23030	0.41	+0.2
2,386,642	-		PGA1_c23030	0.44	+0.4
2,386,752	+		PGA1_c23030	0.57	+0.9
2,386,761	-		PGA1_c23030	0.58	+0.3