Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22850

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.00002 mg/ml
2,366,368	+		PGA1_c22820	0.35	+0.9
2,366,368	+		PGA1_c22820	0.35	+0.6
2,366,376	-		PGA1_c22820	0.37	+0.1
2,366,405	-		PGA1_c22820	0.42	-1.5
2,366,560	+		PGA1_c22820	0.69	+0.4
2,366,560	+		PGA1_c22820	0.69	-0.9
2,366,574	-		PGA1_c22820	0.71	-0.7
2,366,629	+		PGA1_c22820	0.80	+0.9
2,366,646	+		PGA1_c22820	0.83	+0.4
2,366,702	+				+0.2
2,366,702	+				+0.7
2,366,710	-				-0.0
2,366,712	-				-0.5
2,366,726	+				+0.3
2,366,734	-				+0.1
2,366,791	-		PGA1_c22830	0.17	-1.1
2,366,794	+		PGA1_c22830	0.18	-1.8
2,366,805	+		PGA1_c22830	0.22	-0.1
2,366,813	-		PGA1_c22830	0.25	+0.2
2,366,813	-		PGA1_c22830	0.25	+1.9
2,366,824	-		PGA1_c22830	0.29	+0.4
2,366,884	-		PGA1_c22830	0.49	+0.3
2,366,884	-		PGA1_c22830	0.49	+0.9
2,366,884	-		PGA1_c22830	0.49	+0.8
2,366,911	-		PGA1_c22830	0.58	+0.2
2,366,966	-		PGA1_c22830	0.77	-0.3
2,366,996	+		PGA1_c22830	0.88	-0.4
2,367,061	+				-1.5
2,367,094	-		PGA1_c22840	0.20	-2.7
2,367,125	+		PGA1_c22840	0.31	-0.1
2,367,181	-		PGA1_c22840	0.51	-1.3
2,367,183	+		PGA1_c22840	0.52	+0.1
2,367,183	+		PGA1_c22840	0.52	+0.7
2,367,191	-		PGA1_c22840	0.54	+1.1
2,367,193	+		PGA1_c22840	0.55	+0.4
2,367,196	-		PGA1_c22840	0.56	-0.3
2,367,196	-		PGA1_c22840	0.56	-0.8
2,367,196	-		PGA1_c22840	0.56	-0.1
2,367,201	-		PGA1_c22840	0.58	-0.2
2,367,201	-		PGA1_c22840	0.58	+1.5
2,367,201	-		PGA1_c22840	0.58	-0.6
2,367,232	+		PGA1_c22840	0.69	+1.4
2,367,240	-		PGA1_c22840	0.72	+0.3
2,367,250	+		PGA1_c22840	0.76	+2.4
2,367,300	-				+0.3
2,367,302	+				+2.1
2,367,312	-				-0.3
2,367,379	+				-1.0
2,367,428	+				-0.6
2,367,490	+				-0.2
2,367,592	-		PGA1_c22850	0.12	+0.9
2,367,615	-		PGA1_c22850	0.13	-0.9
2,367,647	+		PGA1_c22850	0.14	+0.4
2,367,649	+		PGA1_c22850	0.14	+0.8
2,367,657	-		PGA1_c22850	0.15	-0.9
2,367,684	+		PGA1_c22850	0.16	-0.3
2,367,694	+		PGA1_c22850	0.16	-0.2
2,367,694	-		PGA1_c22850	0.16	-1.1
2,367,702	-		PGA1_c22850	0.17	-0.2
2,367,807	-		PGA1_c22850	0.21	-0.2
2,368,024	+		PGA1_c22850	0.30	+1.2
2,368,032	-		PGA1_c22850	0.31	+0.1
2,368,054	+		PGA1_c22850	0.32	+0.1
2,368,090	-		PGA1_c22850	0.33	-0.7
2,368,118	+		PGA1_c22850	0.34	-1.5
2,368,118	+		PGA1_c22850	0.34	-1.7
2,368,118	+		PGA1_c22850	0.34	-0.2
2,368,140	+		PGA1_c22850	0.35	-0.1
2,368,148	-		PGA1_c22850	0.36	-1.9
2,368,148	-		PGA1_c22850	0.36	-0.1
2,368,184	+		PGA1_c22850	0.37	-0.0
2,368,184	-		PGA1_c22850	0.37	-1.1
2,368,272	+		PGA1_c22850	0.41	+1.1
2,368,290	-		PGA1_c22850	0.42	-0.7
2,368,310	+		PGA1_c22850	0.42	-0.6
2,368,311	+		PGA1_c22850	0.42	-0.8
2,368,333	-		PGA1_c22850	0.43	-0.6
2,368,333	-		PGA1_c22850	0.43	+0.2
2,368,358	+		PGA1_c22850	0.44	-0.0
2,368,358	+		PGA1_c22850	0.44	+0.9
2,368,358	+		PGA1_c22850	0.44	-1.1
2,368,418	-		PGA1_c22850	0.47	+0.5
2,368,436	+		PGA1_c22850	0.48	-0.5
2,368,436	+		PGA1_c22850	0.48	+0.7
2,368,556	-		PGA1_c22850	0.53	-0.7
2,368,657	-		PGA1_c22850	0.57	+0.0
2,368,666	-		PGA1_c22850	0.57	-1.3
2,368,755	+		PGA1_c22850	0.61	-0.2
2,368,755	+		PGA1_c22850	0.61	+0.9
2,368,763	-		PGA1_c22850	0.62	-2.8
2,368,763	-		PGA1_c22850	0.62	+0.7
2,368,802	+		PGA1_c22850	0.63	-0.3
2,368,840	-		PGA1_c22850	0.65	-0.3
2,368,919	+		PGA1_c22850	0.68	-0.0
2,368,963	-		PGA1_c22850	0.70	+0.3
2,368,972	-		PGA1_c22850	0.70	-1.0
2,369,012	+		PGA1_c22850	0.72	-0.7
2,369,037	+		PGA1_c22850	0.73	-0.4
2,369,045	-		PGA1_c22850	0.73	-1.2
2,369,062	+		PGA1_c22850	0.74	-0.9
2,369,181	-		PGA1_c22850	0.79	+0.3
2,369,217	+		PGA1_c22850	0.81	+0.5
2,369,222	+		PGA1_c22850	0.81	+0.8
2,369,225	-		PGA1_c22850	0.81	-0.7
2,369,225	-		PGA1_c22850	0.81	-0.6
2,369,225	-		PGA1_c22850	0.81	-1.7
2,369,257	-		PGA1_c22850	0.82	-0.8
2,369,306	-		PGA1_c22850	0.84	-0.8
2,369,452	+				+0.1
2,369,487	+				-0.4
2,369,535	+				-0.3
2,369,542	+				+0.7
2,369,579	+				+1.1
2,369,582	+				-0.1
2,369,661	+				+0.4
2,369,696	-		PGA1_c22860	0.19	-0.4
2,369,709	-		PGA1_c22860	0.27	+0.4
2,369,787	-		PGA1_c22860	0.76	-1.0
2,369,802	-		PGA1_c22860	0.86	-0.1
2,369,840	-				-0.2
2,369,847	+				-0.6
2,369,847	+				-1.8
2,369,865	-				-0.3
2,369,880	+				-0.2
2,369,928	+				+1.1
2,369,936	+		PGA1_c22870	0.10	-1.1
2,369,992	+		PGA1_c22870	0.15	+0.1
2,370,000	-		PGA1_c22870	0.16	+0.3
2,370,007	+		PGA1_c22870	0.17	-0.2
2,370,170	-		PGA1_c22870	0.31	-1.1
2,370,170	-		PGA1_c22870	0.31	+0.3
2,370,170	-		PGA1_c22870	0.31	+0.9
2,370,356	+		PGA1_c22870	0.47	+1.2
2,370,362	+		PGA1_c22870	0.47	+0.7
2,370,373	+		PGA1_c22870	0.48	-1.0
2,370,376	-		PGA1_c22870	0.49	+1.1
2,370,378	+		PGA1_c22870	0.49	-0.0
2,370,378	+		PGA1_c22870	0.49	-0.9
2,370,378	+		PGA1_c22870	0.49	+0.9
2,370,378	+		PGA1_c22870	0.49	-0.4
2,370,378	+		PGA1_c22870	0.49	+0.0
2,370,378	+		PGA1_c22870	0.49	-0.3
2,370,378	+		PGA1_c22870	0.49	+2.4
2,370,378	+		PGA1_c22870	0.49	+1.3
2,370,378	+		PGA1_c22870	0.49	+0.5
2,370,386	-		PGA1_c22870	0.50	+1.5
2,370,386	-		PGA1_c22870	0.50	-0.0
2,370,525	+		PGA1_c22870	0.62	+0.1
2,370,525	+		PGA1_c22870	0.62	+0.7
2,370,571	+		PGA1_c22870	0.66	-0.8
2,370,571	+		PGA1_c22870	0.66	+0.7
2,370,571	+		PGA1_c22870	0.66	-0.0
2,370,579	-		PGA1_c22870	0.66	-0.3
2,370,579	-		PGA1_c22870	0.66	+1.0
2,370,579	-		PGA1_c22870	0.66	+0.5
2,370,579	-		PGA1_c22870	0.66	-1.9
2,370,581	-		PGA1_c22870	0.66	+1.8