Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21960

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21950 and PGA1_c21960 are separated by 15 nucleotidesPGA1_c21960 and PGA1_c21970 are separated by 39 nucleotides PGA1_c21950: PGA1_c21950 - putative N-acetylmuramoyl-L-alanine amidase AmiD, at 2,276,453 to 2,277,166 _c21950 PGA1_c21960: PGA1_c21960 - hypothetical protein, at 2,277,182 to 2,277,955 _c21960 PGA1_c21970: PGA1_c21970 - glutamyl-tRNA(Gln) amidotransferase subunit A, at 2,277,995 to 2,279,482 _c21970 Position (kb) 2277 2278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2276.339 kb on + strandat 2276.367 kb on - strandat 2276.375 kb on + strandat 2276.459 kb on - strandat 2276.490 kb on - strandat 2276.492 kb on + strandat 2276.535 kb on + strand, within PGA1_c21950at 2276.543 kb on - strand, within PGA1_c21950at 2276.545 kb on + strand, within PGA1_c21950at 2276.568 kb on + strand, within PGA1_c21950at 2276.626 kb on - strand, within PGA1_c21950at 2276.654 kb on - strand, within PGA1_c21950at 2276.692 kb on - strand, within PGA1_c21950at 2276.759 kb on - strand, within PGA1_c21950at 2276.801 kb on - strand, within PGA1_c21950at 2276.801 kb on - strand, within PGA1_c21950at 2276.903 kb on + strand, within PGA1_c21950at 2276.911 kb on - strand, within PGA1_c21950at 2277.009 kb on + strand, within PGA1_c21950at 2277.041 kb on + strand, within PGA1_c21950at 2277.122 kb on + strandat 2277.162 kb on + strandat 2277.185 kb on + strandat 2277.188 kb on - strandat 2277.394 kb on + strand, within PGA1_c21960at 2277.394 kb on + strand, within PGA1_c21960at 2277.394 kb on + strand, within PGA1_c21960at 2277.394 kb on + strand, within PGA1_c21960at 2277.399 kb on + strand, within PGA1_c21960at 2277.402 kb on - strand, within PGA1_c21960at 2277.402 kb on - strand, within PGA1_c21960at 2277.402 kb on - strand, within PGA1_c21960at 2277.402 kb on - strand, within PGA1_c21960at 2277.425 kb on + strand, within PGA1_c21960at 2277.491 kb on + strand, within PGA1_c21960at 2277.606 kb on + strand, within PGA1_c21960at 2277.913 kb on + strandat 2277.986 kb on + strandat 2277.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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2,276,339 + -0.7
2,276,367 - -0.3
2,276,375 + +0.1
2,276,459 - -0.8
2,276,490 - +0.3
2,276,492 + -0.7
2,276,535 + PGA1_c21950 0.11 -0.7
2,276,543 - PGA1_c21950 0.13 -0.5
2,276,545 + PGA1_c21950 0.13 -0.9
2,276,568 + PGA1_c21950 0.16 +0.1
2,276,626 - PGA1_c21950 0.24 +2.2
2,276,654 - PGA1_c21950 0.28 +0.2
2,276,692 - PGA1_c21950 0.33 -0.1
2,276,759 - PGA1_c21950 0.43 -0.4
2,276,801 - PGA1_c21950 0.49 -0.8
2,276,801 - PGA1_c21950 0.49 -0.5
2,276,903 + PGA1_c21950 0.63 -2.9
2,276,911 - PGA1_c21950 0.64 +0.5
2,277,009 + PGA1_c21950 0.78 +0.3
2,277,041 + PGA1_c21950 0.82 -1.5
2,277,122 + -1.3
2,277,162 + +1.5
2,277,185 + +1.6
2,277,188 - -0.7
2,277,394 + PGA1_c21960 0.27 -0.7
2,277,394 + PGA1_c21960 0.27 -0.4
2,277,394 + PGA1_c21960 0.27 -1.2
2,277,394 + PGA1_c21960 0.27 +0.6
2,277,399 + PGA1_c21960 0.28 -0.0
2,277,402 - PGA1_c21960 0.28 +1.4
2,277,402 - PGA1_c21960 0.28 +0.4
2,277,402 - PGA1_c21960 0.28 +0.6
2,277,402 - PGA1_c21960 0.28 +0.8
2,277,425 + PGA1_c21960 0.31 +1.4
2,277,491 + PGA1_c21960 0.40 +0.4
2,277,606 + PGA1_c21960 0.55 +0.3
2,277,913 + +1.6
2,277,986 + +0.2
2,277,994 - -0.4

Or see this region's nucleotide sequence