Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19860

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c19850 and PGA1_c19860 are separated by 123 nucleotidesPGA1_c19860 and PGA1_c19870 are separated by 141 nucleotides PGA1_c19850: PGA1_c19850 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 2,060,758 to 2,061,735 _c19850 PGA1_c19860: PGA1_c19860 - dimethyladenosine transferase KsgA, at 2,061,859 to 2,062,704 _c19860 PGA1_c19870: PGA1_c19870 - hypothetical protein, at 2,062,846 to 2,063,565 _c19870 Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -2 -1 0 1 2at 2061.717 kb on + strandat 2061.724 kb on - strandat 2061.725 kb on - strandat 2061.739 kb on + strandat 2061.814 kb on - strandat 2061.814 kb on - strandat 2061.880 kb on - strandat 2061.886 kb on - strandat 2061.888 kb on + strandat 2062.043 kb on + strand, within PGA1_c19860at 2062.064 kb on - strand, within PGA1_c19860at 2062.064 kb on - strand, within PGA1_c19860at 2062.095 kb on - strand, within PGA1_c19860at 2062.139 kb on - strand, within PGA1_c19860at 2062.169 kb on + strand, within PGA1_c19860at 2062.174 kb on + strand, within PGA1_c19860at 2062.192 kb on - strand, within PGA1_c19860at 2062.292 kb on + strand, within PGA1_c19860at 2062.343 kb on - strand, within PGA1_c19860at 2062.368 kb on - strand, within PGA1_c19860at 2062.406 kb on + strand, within PGA1_c19860at 2062.549 kb on - strand, within PGA1_c19860at 2062.573 kb on + strand, within PGA1_c19860at 2062.616 kb on - strand, within PGA1_c19860at 2062.650 kb on + strandat 2062.650 kb on + strandat 2062.663 kb on - strandat 2062.672 kb on + strandat 2062.698 kb on + strandat 2062.701 kb on - strandat 2062.726 kb on - strandat 2062.918 kb on - strand, within PGA1_c19870at 2063.023 kb on - strand, within PGA1_c19870at 2063.044 kb on - strand, within PGA1_c19870at 2063.582 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
remove
2,061,717 + -1.3
2,061,724 - -0.3
2,061,725 - -0.3
2,061,739 + -1.4
2,061,814 - +0.3
2,061,814 - +0.2
2,061,880 - +1.3
2,061,886 - +0.4
2,061,888 + -0.3
2,062,043 + PGA1_c19860 0.22 -0.2
2,062,064 - PGA1_c19860 0.24 +0.5
2,062,064 - PGA1_c19860 0.24 -1.2
2,062,095 - PGA1_c19860 0.28 -0.7
2,062,139 - PGA1_c19860 0.33 -0.4
2,062,169 + PGA1_c19860 0.37 -0.9
2,062,174 + PGA1_c19860 0.37 +1.3
2,062,192 - PGA1_c19860 0.39 +0.2
2,062,292 + PGA1_c19860 0.51 -0.0
2,062,343 - PGA1_c19860 0.57 +1.0
2,062,368 - PGA1_c19860 0.60 +0.4
2,062,406 + PGA1_c19860 0.65 +2.3
2,062,549 - PGA1_c19860 0.82 +0.9
2,062,573 + PGA1_c19860 0.84 +1.0
2,062,616 - PGA1_c19860 0.89 +0.1
2,062,650 + +1.6
2,062,650 + -0.4
2,062,663 - -0.5
2,062,672 + +0.3
2,062,698 + -0.5
2,062,701 - +0.6
2,062,726 - -2.1
2,062,918 - PGA1_c19870 0.10 -0.4
2,063,023 - PGA1_c19870 0.25 +0.8
2,063,044 - PGA1_c19870 0.28 -1.2
2,063,582 - +1.6

Or see this region's nucleotide sequence