Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01620 and PGA1_c01630 are separated by 12 nucleotides PGA1_c01630 and PGA1_c01640 are separated by 120 nucleotides PGA1_c01640 and PGA1_c01650 are separated by 122 nucleotides PGA1_c01650 and PGA1_c01660 are separated by 67 nucleotides
PGA1_c01620: PGA1_c01620 - 30S ribosomal protein S3, at 156,367 to 157,074
_c01620
PGA1_c01630: PGA1_c01630 - 50S ribosomal protein L16, at 157,087 to 157,500
_c01630
PGA1_c01640: PGA1_c01640 - Electron transfer DM13., at 157,621 to 158,088
_c01640
PGA1_c01650: PGA1_c01650 - conserved hypothetical protein, at 158,211 to 158,831
_c01650
PGA1_c01660: PGA1_c01660 - hypothetical protein, at 158,899 to 159,243
_c01660
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.609 kb on - strand at 157.648 kb on - strand at 157.659 kb on + strand at 157.664 kb on + strand at 157.667 kb on - strand at 157.667 kb on - strand at 157.667 kb on - strand at 157.667 kb on - strand at 157.672 kb on - strand, within PGA1_c01640 at 157.672 kb on - strand, within PGA1_c01640 at 157.681 kb on + strand, within PGA1_c01640 at 157.682 kb on + strand, within PGA1_c01640 at 157.689 kb on - strand, within PGA1_c01640 at 157.704 kb on + strand, within PGA1_c01640 at 157.712 kb on - strand, within PGA1_c01640 at 157.712 kb on - strand, within PGA1_c01640 at 157.719 kb on + strand, within PGA1_c01640 at 157.719 kb on + strand, within PGA1_c01640 at 157.727 kb on - strand, within PGA1_c01640 at 157.774 kb on - strand, within PGA1_c01640 at 157.774 kb on - strand, within PGA1_c01640 at 157.776 kb on + strand, within PGA1_c01640 at 157.776 kb on + strand, within PGA1_c01640 at 157.781 kb on + strand, within PGA1_c01640 at 157.784 kb on - strand, within PGA1_c01640 at 157.833 kb on + strand, within PGA1_c01640 at 157.878 kb on + strand, within PGA1_c01640 at 157.878 kb on + strand, within PGA1_c01640 at 157.943 kb on + strand, within PGA1_c01640 at 157.969 kb on + strand, within PGA1_c01640 at 157.993 kb on + strand, within PGA1_c01640 at 157.993 kb on + strand, within PGA1_c01640 at 157.993 kb on + strand, within PGA1_c01640 at 158.001 kb on - strand, within PGA1_c01640 at 158.016 kb on + strand, within PGA1_c01640 at 158.039 kb on - strand, within PGA1_c01640 at 158.049 kb on + strand at 158.057 kb on - strand at 158.070 kb on - strand at 158.070 kb on - strand at 158.106 kb on + strand at 158.114 kb on - strand at 158.114 kb on - strand at 158.115 kb on + strand at 158.119 kb on - strand at 158.123 kb on - strand at 158.140 kb on + strand at 158.190 kb on + strand at 158.198 kb on - strand at 158.198 kb on - strand at 158.203 kb on + strand at 158.203 kb on - strand at 158.279 kb on + strand, within PGA1_c01650 at 158.280 kb on - strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.342 kb on + strand, within PGA1_c01650 at 158.342 kb on + strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.347 kb on + strand, within PGA1_c01650 at 158.347 kb on + strand, within PGA1_c01650 at 158.350 kb on - strand, within PGA1_c01650 at 158.350 kb on - strand, within PGA1_c01650 at 158.397 kb on + strand, within PGA1_c01650 at 158.397 kb on + strand, within PGA1_c01650 at 158.410 kb on - strand, within PGA1_c01650 at 158.502 kb on - strand, within PGA1_c01650 at 158.561 kb on + strand, within PGA1_c01650 at 158.561 kb on + strand, within PGA1_c01650 at 158.676 kb on + strand, within PGA1_c01650 at 158.686 kb on + strand, within PGA1_c01650 at 158.744 kb on - strand, within PGA1_c01650 at 158.769 kb on - strand, within PGA1_c01650 at 158.809 kb on + strand at 158.809 kb on + strand at 158.809 kb on + strand at 158.817 kb on - strand at 158.817 kb on - strand at 158.860 kb on + strand at 158.860 kb on + strand at 158.863 kb on + strand at 158.863 kb on + strand at 158.875 kb on + strand at 158.875 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.883 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.943 kb on + strand, within PGA1_c01660 at 159.047 kb on - strand, within PGA1_c01660 at 159.056 kb on + strand, within PGA1_c01660 at 159.081 kb on + strand, within PGA1_c01660
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 157,609 - +0.1 157,648 - -1.0 157,659 + +1.2 157,664 + -0.6 157,667 - +1.3 157,667 - -0.1 157,667 - -1.2 157,667 - +0.6 157,672 - PGA1_c01640 0.11 -0.6 157,672 - PGA1_c01640 0.11 +0.3 157,681 + PGA1_c01640 0.13 +1.2 157,682 + PGA1_c01640 0.13 -0.2 157,689 - PGA1_c01640 0.15 -0.3 157,704 + PGA1_c01640 0.18 -0.8 157,712 - PGA1_c01640 0.19 -0.2 157,712 - PGA1_c01640 0.19 +0.6 157,719 + PGA1_c01640 0.21 +0.7 157,719 + PGA1_c01640 0.21 -1.4 157,727 - PGA1_c01640 0.23 +0.2 157,774 - PGA1_c01640 0.33 -0.0 157,774 - PGA1_c01640 0.33 -0.7 157,776 + PGA1_c01640 0.33 -1.1 157,776 + PGA1_c01640 0.33 +1.0 157,781 + PGA1_c01640 0.34 -0.4 157,784 - PGA1_c01640 0.35 +0.3 157,833 + PGA1_c01640 0.45 +0.2 157,878 + PGA1_c01640 0.55 -0.5 157,878 + PGA1_c01640 0.55 -0.7 157,943 + PGA1_c01640 0.69 -0.3 157,969 + PGA1_c01640 0.74 -0.2 157,993 + PGA1_c01640 0.79 -0.8 157,993 + PGA1_c01640 0.79 -0.9 157,993 + PGA1_c01640 0.79 -0.6 158,001 - PGA1_c01640 0.81 -0.7 158,016 + PGA1_c01640 0.84 +0.6 158,039 - PGA1_c01640 0.89 -0.2 158,049 + -0.1 158,057 - -1.2 158,070 - -0.7 158,070 - -0.8 158,106 + +0.7 158,114 - +0.9 158,114 - +0.2 158,115 + +0.6 158,119 - +1.2 158,123 - -0.5 158,140 + +0.3 158,190 + -1.5 158,198 - -0.4 158,198 - +0.2 158,203 + -1.4 158,203 - +0.3 158,279 + PGA1_c01650 0.11 +0.2 158,280 - PGA1_c01650 0.11 -1.2 158,337 + PGA1_c01650 0.20 +0.4 158,337 + PGA1_c01650 0.20 -0.4 158,337 + PGA1_c01650 0.20 +0.9 158,337 + PGA1_c01650 0.20 +0.3 158,337 + PGA1_c01650 0.20 +1.8 158,337 + PGA1_c01650 0.20 +0.8 158,337 + PGA1_c01650 0.20 -1.2 158,342 + PGA1_c01650 0.21 -1.0 158,342 + PGA1_c01650 0.21 -1.5 158,345 - PGA1_c01650 0.22 -1.7 158,345 - PGA1_c01650 0.22 -0.2 158,345 - PGA1_c01650 0.22 +0.3 158,345 - PGA1_c01650 0.22 +0.2 158,347 + PGA1_c01650 0.22 -2.0 158,347 + PGA1_c01650 0.22 +0.9 158,350 - PGA1_c01650 0.22 +0.9 158,350 - PGA1_c01650 0.22 -1.8 158,397 + PGA1_c01650 0.30 -0.1 158,397 + PGA1_c01650 0.30 -0.7 158,410 - PGA1_c01650 0.32 +0.2 158,502 - PGA1_c01650 0.47 -2.2 158,561 + PGA1_c01650 0.56 +0.6 158,561 + PGA1_c01650 0.56 -0.1 158,676 + PGA1_c01650 0.75 +3.4 158,686 + PGA1_c01650 0.76 +1.9 158,744 - PGA1_c01650 0.86 +1.3 158,769 - PGA1_c01650 0.90 +1.1 158,809 + -0.3 158,809 + +0.7 158,809 + -0.5 158,817 - +0.8 158,817 - -0.5 158,860 + -0.2 158,860 + +0.1 158,863 + -0.4 158,863 + -0.0 158,875 + -1.7 158,875 + -0.8 158,877 + -1.4 158,877 + +0.7 158,877 + -0.3 158,877 + -1.1 158,877 + +0.9 158,877 + -1.2 158,877 + +0.6 158,877 + -0.2 158,877 + -0.6 158,877 + -0.5 158,877 + -0.6 158,877 + -0.7 158,878 + -0.4 158,878 + -0.2 158,878 + -0.5 158,883 - -1.4 158,885 - +0.1 158,885 - -0.8 158,885 - +0.8 158,885 - +0.5 158,885 - +0.6 158,885 - +0.7 158,885 - +0.3 158,943 + PGA1_c01660 0.13 -0.1 159,047 - PGA1_c01660 0.43 +0.0 159,056 + PGA1_c01660 0.46 -1.5 159,081 + PGA1_c01660 0.53 +0.1
Or see this region's nucleotide sequence