Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16040 and PGA1_c16050 are separated by 3 nucleotides PGA1_c16050 and PGA1_c16060 are separated by 26 nucleotides PGA1_c16060 and PGA1_c16070 are separated by 324 nucleotides
PGA1_c16040: PGA1_c16040 - Methionine synthase component, pterin-binding domain (EC:2.1.1.13) (from data) , at 1,664,098 to 1,665,159
_c16040
PGA1_c16050: PGA1_c16050 - 5,10-methylenetetrahydrofolate reductase, at 1,665,163 to 1,666,095
_c16050
PGA1_c16060: PGA1_c16060 - hypothetical protein, at 1,666,122 to 1,666,418
_c16060
PGA1_c16070: PGA1_c16070 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase-like protein, at 1,666,743 to 1,667,855
_c16070
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1664.270 kb on - strand, within PGA1_c16040 at 1664.320 kb on - strand, within PGA1_c16040 at 1664.410 kb on + strand, within PGA1_c16040 at 1664.418 kb on - strand, within PGA1_c16040 at 1664.431 kb on - strand, within PGA1_c16040 at 1664.556 kb on + strand, within PGA1_c16040 at 1664.811 kb on - strand, within PGA1_c16040 at 1664.923 kb on - strand, within PGA1_c16040 at 1664.985 kb on - strand, within PGA1_c16040 at 1664.987 kb on + strand, within PGA1_c16040 at 1664.995 kb on - strand, within PGA1_c16040 at 1665.235 kb on - strand at 1665.465 kb on + strand, within PGA1_c16050 at 1665.473 kb on - strand, within PGA1_c16050 at 1665.479 kb on + strand, within PGA1_c16050 at 1665.480 kb on + strand, within PGA1_c16050 at 1665.638 kb on + strand, within PGA1_c16050 at 1665.726 kb on - strand, within PGA1_c16050 at 1665.726 kb on - strand, within PGA1_c16050 at 1665.732 kb on - strand, within PGA1_c16050 at 1665.785 kb on + strand, within PGA1_c16050 at 1665.932 kb on + strand, within PGA1_c16050 at 1665.992 kb on + strand, within PGA1_c16050 at 1666.056 kb on - strand at 1666.061 kb on - strand at 1666.104 kb on + strand at 1666.152 kb on + strand, within PGA1_c16060 at 1666.152 kb on + strand, within PGA1_c16060 at 1666.160 kb on - strand, within PGA1_c16060 at 1666.161 kb on + strand, within PGA1_c16060 at 1666.218 kb on - strand, within PGA1_c16060 at 1666.229 kb on - strand, within PGA1_c16060 at 1666.248 kb on + strand, within PGA1_c16060 at 1666.305 kb on + strand, within PGA1_c16060 at 1666.379 kb on - strand, within PGA1_c16060 at 1666.395 kb on + strand at 1666.420 kb on + strand at 1666.506 kb on - strand at 1666.555 kb on - strand at 1666.555 kb on - strand at 1666.555 kb on - strand at 1666.560 kb on - strand at 1666.562 kb on + strand at 1666.591 kb on - strand at 1666.623 kb on - strand at 1666.668 kb on + strand at 1666.668 kb on + strand at 1666.678 kb on - strand at 1666.687 kb on - strand at 1666.687 kb on - strand at 1666.689 kb on - strand at 1666.711 kb on - strand at 1666.726 kb on + strand at 1666.765 kb on - strand at 1666.765 kb on - strand at 1666.795 kb on + strand at 1666.805 kb on + strand at 1666.952 kb on + strand, within PGA1_c16070 at 1667.041 kb on - strand, within PGA1_c16070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 1,664,270 - PGA1_c16040 0.16 +0.7 1,664,320 - PGA1_c16040 0.21 -1.1 1,664,410 + PGA1_c16040 0.29 -0.8 1,664,418 - PGA1_c16040 0.30 +0.9 1,664,431 - PGA1_c16040 0.31 -2.3 1,664,556 + PGA1_c16040 0.43 -1.5 1,664,811 - PGA1_c16040 0.67 -0.2 1,664,923 - PGA1_c16040 0.78 +0.8 1,664,985 - PGA1_c16040 0.84 -0.5 1,664,987 + PGA1_c16040 0.84 -0.2 1,664,995 - PGA1_c16040 0.84 +0.7 1,665,235 - +0.6 1,665,465 + PGA1_c16050 0.32 +1.2 1,665,473 - PGA1_c16050 0.33 -0.2 1,665,479 + PGA1_c16050 0.34 +2.0 1,665,480 + PGA1_c16050 0.34 -0.3 1,665,638 + PGA1_c16050 0.51 +0.4 1,665,726 - PGA1_c16050 0.60 +0.9 1,665,726 - PGA1_c16050 0.60 +0.3 1,665,732 - PGA1_c16050 0.61 +0.3 1,665,785 + PGA1_c16050 0.67 +1.3 1,665,932 + PGA1_c16050 0.82 +0.8 1,665,992 + PGA1_c16050 0.89 -0.6 1,666,056 - -0.5 1,666,061 - +0.9 1,666,104 + +0.4 1,666,152 + PGA1_c16060 0.10 +1.5 1,666,152 + PGA1_c16060 0.10 -0.6 1,666,160 - PGA1_c16060 0.13 +0.9 1,666,161 + PGA1_c16060 0.13 +0.4 1,666,218 - PGA1_c16060 0.32 -0.2 1,666,229 - PGA1_c16060 0.36 -1.2 1,666,248 + PGA1_c16060 0.42 +0.0 1,666,305 + PGA1_c16060 0.62 -0.2 1,666,379 - PGA1_c16060 0.87 +0.6 1,666,395 + -0.7 1,666,420 + -2.1 1,666,506 - +0.7 1,666,555 - -0.3 1,666,555 - -0.1 1,666,555 - -0.3 1,666,560 - +0.1 1,666,562 + +1.0 1,666,591 - -1.2 1,666,623 - +0.1 1,666,668 + +1.1 1,666,668 + -0.4 1,666,678 - +0.4 1,666,687 - +1.8 1,666,687 - +1.0 1,666,689 - -0.5 1,666,711 - -2.2 1,666,726 + -1.3 1,666,765 - -0.2 1,666,765 - +0.6 1,666,795 + +0.9 1,666,805 + -0.1 1,666,952 + PGA1_c16070 0.19 +0.2 1,667,041 - PGA1_c16070 0.27 -0.5
Or see this region's nucleotide sequence