Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15080 and PGA1_c15090 are separated by 68 nucleotides PGA1_c15090 and PGA1_c15100 are separated by 207 nucleotides PGA1_c15100 and PGA1_c15110 are separated by 91 nucleotides
PGA1_c15080: PGA1_c15080 - Hydrogenase/urease accessory protein, at 1,567,019 to 1,568,227
_c15080
PGA1_c15090: PGA1_c15090 - putative thiamine monophosphate synthase, at 1,568,296 to 1,568,931
_c15090
PGA1_c15100: PGA1_c15100 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,569,139 to 1,569,885
_c15100
PGA1_c15110: PGA1_c15110 - heme A synthase CtaA, at 1,569,977 to 1,571,125
_c15110
Position (kb)
1569
1570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1568.178 kb on + strand at 1568.183 kb on + strand at 1568.203 kb on - strand at 1568.203 kb on - strand at 1568.226 kb on + strand at 1568.226 kb on + strand at 1568.280 kb on - strand at 1568.285 kb on - strand at 1568.990 kb on + strand at 1569.083 kb on + strand at 1569.083 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on - strand at 1569.099 kb on - strand at 1569.101 kb on + strand at 1569.106 kb on + strand at 1569.108 kb on + strand at 1569.164 kb on + strand at 1569.279 kb on + strand, within PGA1_c15100 at 1569.287 kb on - strand, within PGA1_c15100 at 1569.425 kb on - strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.691 kb on + strand, within PGA1_c15100 at 1569.779 kb on - strand, within PGA1_c15100 at 1569.808 kb on + strand, within PGA1_c15100 at 1569.818 kb on + strand at 1569.892 kb on + strand at 1569.910 kb on - strand at 1569.913 kb on + strand at 1569.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 1,568,178 + -1.5 1,568,183 + +1.1 1,568,203 - +0.5 1,568,203 - -0.5 1,568,226 + -0.4 1,568,226 + -0.2 1,568,280 - +2.0 1,568,285 - -0.8 1,568,990 + -0.1 1,569,083 + +0.7 1,569,083 + +0.1 1,569,091 + -0.3 1,569,091 + +0.0 1,569,091 - -1.4 1,569,099 - +0.4 1,569,101 + -0.3 1,569,106 + -2.3 1,569,108 + -1.0 1,569,164 + -0.6 1,569,279 + PGA1_c15100 0.19 +1.5 1,569,287 - PGA1_c15100 0.20 -0.9 1,569,425 - PGA1_c15100 0.38 -0.0 1,569,469 + PGA1_c15100 0.44 +1.8 1,569,469 + PGA1_c15100 0.44 +1.1 1,569,587 - PGA1_c15100 0.60 +0.3 1,569,587 - PGA1_c15100 0.60 +0.1 1,569,691 + PGA1_c15100 0.74 -0.3 1,569,779 - PGA1_c15100 0.86 -0.0 1,569,808 + PGA1_c15100 0.90 +0.6 1,569,818 + -1.3 1,569,892 + +0.3 1,569,910 - +1.5 1,569,913 + -0.4 1,569,923 + +1.0
Or see this region's nucleotide sequence