Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13410 and PGA1_c13420 overlap by 4 nucleotides PGA1_c13420 and PGA1_c13430 are separated by 37 nucleotides PGA1_c13430 and PGA1_c13440 are separated by 29 nucleotides
PGA1_c13410: PGA1_c13410 - phosphoribosylformylglycinamidine (FGAM) synthase PurS, at 1,385,246 to 1,385,479
_c13410
PGA1_c13420: PGA1_c13420 - phosphoribosylformylglycinamidine synthase 1, at 1,385,476 to 1,386,144
_c13420
PGA1_c13430: PGA1_c13430 - C4-dicarboxylate transport sensor protein DctB, at 1,386,182 to 1,387,951
_c13430
PGA1_c13440: PGA1_c13440 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 1,387,981 to 1,389,318
_c13440
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-1
0
1
2 at 1385.304 kb on - strand, within PGA1_c13410 at 1385.311 kb on - strand, within PGA1_c13410 at 1385.396 kb on + strand, within PGA1_c13410 at 1385.488 kb on + strand at 1385.496 kb on - strand at 1385.730 kb on + strand, within PGA1_c13420 at 1386.103 kb on + strand at 1386.126 kb on + strand at 1386.199 kb on + strand at 1386.390 kb on - strand, within PGA1_c13430 at 1386.529 kb on - strand, within PGA1_c13430 at 1386.672 kb on + strand, within PGA1_c13430 at 1386.716 kb on - strand, within PGA1_c13430 at 1386.962 kb on + strand, within PGA1_c13430 at 1387.109 kb on + strand, within PGA1_c13430 at 1387.135 kb on - strand, within PGA1_c13430 at 1387.268 kb on - strand, within PGA1_c13430 at 1387.375 kb on - strand, within PGA1_c13430 at 1387.515 kb on + strand, within PGA1_c13430 at 1387.515 kb on + strand, within PGA1_c13430 at 1387.634 kb on - strand, within PGA1_c13430 at 1387.635 kb on - strand, within PGA1_c13430 at 1387.635 kb on - strand, within PGA1_c13430 at 1387.704 kb on + strand, within PGA1_c13430 at 1387.709 kb on + strand, within PGA1_c13430 at 1387.724 kb on - strand, within PGA1_c13430 at 1387.771 kb on + strand, within PGA1_c13430 at 1387.771 kb on + strand, within PGA1_c13430 at 1387.779 kb on - strand at 1387.780 kb on + strand at 1387.809 kb on + strand at 1387.817 kb on - strand at 1387.822 kb on - strand at 1387.849 kb on - strand at 1387.880 kb on + strand at 1387.885 kb on + strand at 1387.888 kb on + strand at 1387.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 1,385,304 - PGA1_c13410 0.25 -1.5 1,385,311 - PGA1_c13410 0.28 +2.4 1,385,396 + PGA1_c13410 0.64 +0.8 1,385,488 + -0.3 1,385,496 - -0.7 1,385,730 + PGA1_c13420 0.38 -0.1 1,386,103 + -1.5 1,386,126 + +0.5 1,386,199 + -0.7 1,386,390 - PGA1_c13430 0.12 +1.6 1,386,529 - PGA1_c13430 0.20 +1.6 1,386,672 + PGA1_c13430 0.28 +0.7 1,386,716 - PGA1_c13430 0.30 +1.4 1,386,962 + PGA1_c13430 0.44 +2.4 1,387,109 + PGA1_c13430 0.52 +1.5 1,387,135 - PGA1_c13430 0.54 -0.1 1,387,268 - PGA1_c13430 0.61 +0.6 1,387,375 - PGA1_c13430 0.67 +0.4 1,387,515 + PGA1_c13430 0.75 -0.2 1,387,515 + PGA1_c13430 0.75 +0.3 1,387,634 - PGA1_c13430 0.82 +1.6 1,387,635 - PGA1_c13430 0.82 -0.7 1,387,635 - PGA1_c13430 0.82 -0.0 1,387,704 + PGA1_c13430 0.86 +0.7 1,387,709 + PGA1_c13430 0.86 +0.6 1,387,724 - PGA1_c13430 0.87 +0.6 1,387,771 + PGA1_c13430 0.90 +0.7 1,387,771 + PGA1_c13430 0.90 +0.3 1,387,779 - +0.9 1,387,780 + -1.0 1,387,809 + +1.4 1,387,817 - +2.2 1,387,822 - +0.3 1,387,849 - -1.0 1,387,880 + -0.5 1,387,885 + +0.4 1,387,888 + -0.8 1,387,888 + +0.2
Or see this region's nucleotide sequence