Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0625 and Dshi_0626 are separated by 230 nucleotides Dshi_0626 and Dshi_0627 overlap by 8 nucleotides Dshi_0627 and Dshi_0628 are separated by 36 nucleotides
Dshi_0625: Dshi_0625 - hypothetical protein (RefSeq), at 623,104 to 623,826
_0625
Dshi_0626: Dshi_0626 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 624,057 to 624,743
_0626
Dshi_0627: Dshi_0627 - ABC transporter related (RefSeq), at 624,736 to 625,491
_0627
Dshi_0628: Dshi_0628 - extracellular solute-binding protein family 1 (RefSeq), at 625,528 to 626,358
_0628
Position (kb) 624
625 Strain fitness (log2 ratio) -1
0
1
2 at 623.220 kb on - strand, within Dshi_0625 at 623.481 kb on - strand, within Dshi_0625 at 624.259 kb on - strand, within Dshi_0626 at 624.305 kb on + strand, within Dshi_0626 at 624.313 kb on + strand, within Dshi_0626 at 624.391 kb on + strand, within Dshi_0626 at 624.397 kb on - strand, within Dshi_0626 at 624.444 kb on + strand, within Dshi_0626 at 624.501 kb on - strand, within Dshi_0626 at 624.522 kb on - strand, within Dshi_0626 at 624.563 kb on - strand, within Dshi_0626 at 624.679 kb on + strand at 624.761 kb on + strand at 624.849 kb on - strand, within Dshi_0627 at 624.881 kb on - strand, within Dshi_0627 at 624.890 kb on - strand, within Dshi_0627 at 624.903 kb on - strand, within Dshi_0627 at 625.039 kb on + strand, within Dshi_0627 at 625.058 kb on - strand at 625.204 kb on + strand, within Dshi_0627 at 625.298 kb on - strand, within Dshi_0627 at 625.342 kb on - strand, within Dshi_0627 at 625.342 kb on - strand, within Dshi_0627 at 625.402 kb on - strand, within Dshi_0627 at 625.619 kb on + strand, within Dshi_0628 at 625.667 kb on - strand, within Dshi_0628 at 625.718 kb on - strand, within Dshi_0628
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 623,220 - Dshi_0625 0.16 +0.2 623,481 - Dshi_0625 0.52 +0.6 624,259 - Dshi_0626 0.29 +0.4 624,305 + Dshi_0626 0.36 +0.2 624,313 + Dshi_0626 0.37 +1.0 624,391 + Dshi_0626 0.49 +0.5 624,397 - Dshi_0626 0.49 +2.2 624,444 + Dshi_0626 0.56 +1.0 624,501 - Dshi_0626 0.65 +0.1 624,522 - Dshi_0626 0.68 +0.5 624,563 - Dshi_0626 0.74 +0.8 624,679 + +0.8 624,761 + -0.4 624,849 - Dshi_0627 0.15 +0.4 624,881 - Dshi_0627 0.19 +1.6 624,890 - Dshi_0627 0.20 -0.2 624,903 - Dshi_0627 0.22 +0.6 625,039 + Dshi_0627 0.40 +0.5 625,058 - +1.9 625,204 + Dshi_0627 0.62 +0.6 625,298 - Dshi_0627 0.74 +0.8 625,342 - Dshi_0627 0.80 +0.4 625,342 - Dshi_0627 0.80 +0.1 625,402 - Dshi_0627 0.88 +1.1 625,619 + Dshi_0628 0.11 -0.4 625,667 - Dshi_0628 0.17 +1.2 625,718 - Dshi_0628 0.23 +0.5
Or see this region's nucleotide sequence