Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0270 and Dshi_0271 are separated by 281 nucleotides Dshi_0271 and Dshi_0272 are separated by 12 nucleotides Dshi_0272 and Dshi_0273 are separated by 25 nucleotides
Dshi_0270: Dshi_0270 - protein of unknown function DUF6 transmembrane (RefSeq), at 273,419 to 274,324
_0270
Dshi_0271: Dshi_0271 - ribosomal protein S12 (RefSeq), at 274,606 to 274,977
_0271
Dshi_0272: Dshi_0272 - ribosomal protein S7 (RefSeq), at 274,990 to 275,460
_0272
Dshi_0273: Dshi_0273 - translation elongation factor G (RefSeq), at 275,486 to 277,603
_0273
Position (kb) 274
275 Strain fitness (log2 ratio) -1
0
1
2 at 273.622 kb on - strand, within Dshi_0270 at 273.674 kb on + strand, within Dshi_0270 at 273.771 kb on - strand, within Dshi_0270 at 273.787 kb on + strand, within Dshi_0270 at 273.800 kb on + strand, within Dshi_0270 at 273.873 kb on + strand, within Dshi_0270 at 273.988 kb on + strand, within Dshi_0270 at 274.022 kb on - strand, within Dshi_0270 at 274.022 kb on - strand, within Dshi_0270 at 274.180 kb on + strand, within Dshi_0270 at 274.180 kb on + strand, within Dshi_0270 at 274.237 kb on - strand at 274.278 kb on - strand at 274.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 273,622 - Dshi_0270 0.22 -0.5 273,674 + Dshi_0270 0.28 +0.5 273,771 - Dshi_0270 0.39 +1.0 273,787 + Dshi_0270 0.41 +1.3 273,800 + Dshi_0270 0.42 +1.4 273,873 + Dshi_0270 0.50 +1.1 273,988 + Dshi_0270 0.63 +0.1 274,022 - Dshi_0270 0.67 +0.3 274,022 - Dshi_0270 0.67 +0.6 274,180 + Dshi_0270 0.84 +0.8 274,180 + Dshi_0270 0.84 +0.8 274,237 - +1.9 274,278 - +0.1 274,362 + +0.5
Or see this region's nucleotide sequence