Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0154 and Dshi_0155 are separated by 710 nucleotides Dshi_0155 and Dshi_0156 overlap by 8 nucleotides Dshi_0156 and Dshi_0157 are separated by 11 nucleotides
Dshi_0154: Dshi_0154 - NADPH-dependent FMN reductase (RefSeq), at 154,275 to 154,820
_0154
Dshi_0155: Dshi_0155 - LrgA family protein (RefSeq), at 155,531 to 155,887
_0155
Dshi_0156: Dshi_0156 - LrgB family protein (RefSeq), at 155,880 to 156,596
_0156
Dshi_0157: Dshi_0157 - cob(I)alamin adenosyltransferase (RefSeq), at 156,608 to 157,222
_0157
Position (kb)
155
156 Strain fitness (log2 ratio)
-1
0
1 at 154.553 kb on - strand, within Dshi_0154 at 154.760 kb on - strand, within Dshi_0154 at 154.797 kb on + strand at 154.805 kb on + strand at 154.814 kb on + strand at 154.848 kb on - strand at 154.853 kb on - strand at 154.854 kb on + strand at 154.953 kb on - strand at 155.014 kb on + strand at 155.032 kb on - strand at 155.065 kb on + strand at 155.073 kb on - strand at 155.073 kb on - strand at 155.252 kb on - strand at 155.304 kb on - strand at 155.352 kb on - strand at 155.371 kb on - strand at 155.483 kb on + strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.491 kb on - strand at 155.520 kb on + strand at 155.600 kb on - strand, within Dshi_0155 at 155.638 kb on + strand, within Dshi_0155 at 155.826 kb on + strand at 155.881 kb on + strand at 155.974 kb on + strand, within Dshi_0156 at 155.997 kb on + strand, within Dshi_0156 at 156.167 kb on - strand, within Dshi_0156 at 156.329 kb on + strand, within Dshi_0156 at 156.413 kb on - strand, within Dshi_0156 at 156.473 kb on + strand, within Dshi_0156 at 156.549 kb on + strand at 156.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 154,553 - Dshi_0154 0.51 -1.7 154,760 - Dshi_0154 0.89 -0.7 154,797 + +0.1 154,805 + -0.0 154,814 + +0.3 154,848 - +0.4 154,853 - -0.6 154,854 + +0.3 154,953 - +0.7 155,014 + -0.2 155,032 - +0.5 155,065 + -1.2 155,073 - +0.6 155,073 - -0.3 155,252 - -0.4 155,304 - +1.0 155,352 - +0.6 155,371 - -0.2 155,483 + -0.1 155,491 - -0.1 155,491 - -1.7 155,491 - +0.5 155,491 - +0.0 155,520 + -0.2 155,600 - Dshi_0155 0.19 +1.7 155,638 + Dshi_0155 0.30 +0.2 155,826 + -0.9 155,881 + +0.9 155,974 + Dshi_0156 0.13 +0.3 155,997 + Dshi_0156 0.16 +0.3 156,167 - Dshi_0156 0.40 -0.1 156,329 + Dshi_0156 0.63 +0.1 156,413 - Dshi_0156 0.74 -1.6 156,473 + Dshi_0156 0.83 -0.2 156,549 + -0.9 156,561 + +0.1
Or see this region's nucleotide sequence