Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0155

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0154 and Dshi_0155 are separated by 710 nucleotidesDshi_0155 and Dshi_0156 overlap by 8 nucleotidesDshi_0156 and Dshi_0157 are separated by 11 nucleotides Dshi_0154: Dshi_0154 - NADPH-dependent FMN reductase (RefSeq), at 154,275 to 154,820 _0154 Dshi_0155: Dshi_0155 - LrgA family protein (RefSeq), at 155,531 to 155,887 _0155 Dshi_0156: Dshi_0156 - LrgB family protein (RefSeq), at 155,880 to 156,596 _0156 Dshi_0157: Dshi_0157 - cob(I)alamin adenosyltransferase (RefSeq), at 156,608 to 157,222 _0157 Position (kb) 155 156Strain fitness (log2 ratio) -1 0 1at 154.553 kb on - strand, within Dshi_0154at 154.760 kb on - strand, within Dshi_0154at 154.797 kb on + strandat 154.805 kb on + strandat 154.814 kb on + strandat 154.848 kb on - strandat 154.853 kb on - strandat 154.854 kb on + strandat 154.953 kb on - strandat 155.014 kb on + strandat 155.032 kb on - strandat 155.065 kb on + strandat 155.073 kb on - strandat 155.073 kb on - strandat 155.252 kb on - strandat 155.304 kb on - strandat 155.352 kb on - strandat 155.371 kb on - strandat 155.483 kb on + strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.491 kb on - strandat 155.520 kb on + strandat 155.600 kb on - strand, within Dshi_0155at 155.638 kb on + strand, within Dshi_0155at 155.826 kb on + strandat 155.881 kb on + strandat 155.974 kb on + strand, within Dshi_0156at 155.997 kb on + strand, within Dshi_0156at 156.167 kb on - strand, within Dshi_0156at 156.329 kb on + strand, within Dshi_0156at 156.413 kb on - strand, within Dshi_0156at 156.473 kb on + strand, within Dshi_0156at 156.549 kb on + strandat 156.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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154,553 - Dshi_0154 0.51 -1.7
154,760 - Dshi_0154 0.89 -0.7
154,797 + +0.1
154,805 + -0.0
154,814 + +0.3
154,848 - +0.4
154,853 - -0.6
154,854 + +0.3
154,953 - +0.7
155,014 + -0.2
155,032 - +0.5
155,065 + -1.2
155,073 - +0.6
155,073 - -0.3
155,252 - -0.4
155,304 - +1.0
155,352 - +0.6
155,371 - -0.2
155,483 + -0.1
155,491 - -0.1
155,491 - -1.7
155,491 - +0.5
155,491 - +0.0
155,520 + -0.2
155,600 - Dshi_0155 0.19 +1.7
155,638 + Dshi_0155 0.30 +0.2
155,826 + -0.9
155,881 + +0.9
155,974 + Dshi_0156 0.13 +0.3
155,997 + Dshi_0156 0.16 +0.3
156,167 - Dshi_0156 0.40 -0.1
156,329 + Dshi_0156 0.63 +0.1
156,413 - Dshi_0156 0.74 -1.6
156,473 + Dshi_0156 0.83 -0.2
156,549 + -0.9
156,561 + +0.1

Or see this region's nucleotide sequence