Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19465 and HSERO_RS19470 are separated by 96 nucleotides HSERO_RS19470 and HSERO_RS19475 overlap by 1 nucleotides HSERO_RS19475 and HSERO_RS19480 are separated by 237 nucleotides
HSERO_RS19465: HSERO_RS19465 - major facilitator transporter, at 4,459,972 to 4,461,453
_RS19465
HSERO_RS19470: HSERO_RS19470 - ubiquinone biosynthesis protein UbiB, at 4,461,550 to 4,463,124
_RS19470
HSERO_RS19475: HSERO_RS19475 - sterol-binding protein, at 4,463,124 to 4,463,690
_RS19475
HSERO_RS19480: HSERO_RS19480 - membrane protein, at 4,463,928 to 4,464,881
_RS19480
Position (kb) 4461
4462
4463
4464 Strain fitness (log2 ratio) -1
0
1 at 4460.596 kb on + strand, within HSERO_RS19465 at 4460.697 kb on - strand, within HSERO_RS19465 at 4460.721 kb on + strand, within HSERO_RS19465 at 4460.782 kb on - strand, within HSERO_RS19465 at 4460.807 kb on - strand, within HSERO_RS19465 at 4460.855 kb on + strand, within HSERO_RS19465 at 4461.016 kb on + strand, within HSERO_RS19465 at 4461.024 kb on - strand, within HSERO_RS19465 at 4461.081 kb on - strand, within HSERO_RS19465 at 4461.106 kb on + strand, within HSERO_RS19465 at 4461.135 kb on + strand, within HSERO_RS19465 at 4461.143 kb on - strand, within HSERO_RS19465 at 4461.143 kb on - strand, within HSERO_RS19465 at 4461.169 kb on + strand, within HSERO_RS19465 at 4461.177 kb on - strand, within HSERO_RS19465 at 4461.182 kb on + strand, within HSERO_RS19465 at 4461.399 kb on + strand at 4463.855 kb on - strand at 4463.874 kb on + strand at 4463.887 kb on - strand at 4463.921 kb on - strand at 4463.986 kb on - strand at 4464.039 kb on - strand, within HSERO_RS19480 at 4464.039 kb on - strand, within HSERO_RS19480
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 4,460,596 + HSERO_RS19465 0.42 +1.1 4,460,697 - HSERO_RS19465 0.49 -1.2 4,460,721 + HSERO_RS19465 0.51 -0.1 4,460,782 - HSERO_RS19465 0.55 +0.4 4,460,807 - HSERO_RS19465 0.56 +0.2 4,460,855 + HSERO_RS19465 0.60 -0.1 4,461,016 + HSERO_RS19465 0.70 +1.4 4,461,024 - HSERO_RS19465 0.71 -0.1 4,461,081 - HSERO_RS19465 0.75 -0.1 4,461,106 + HSERO_RS19465 0.77 +1.1 4,461,135 + HSERO_RS19465 0.78 +0.3 4,461,143 - HSERO_RS19465 0.79 -0.1 4,461,143 - HSERO_RS19465 0.79 -0.7 4,461,169 + HSERO_RS19465 0.81 +0.5 4,461,177 - HSERO_RS19465 0.81 +1.5 4,461,182 + HSERO_RS19465 0.82 -0.1 4,461,399 + +0.6 4,463,855 - -1.2 4,463,874 + +0.9 4,463,887 - -0.2 4,463,921 - -0.9 4,463,986 - -0.2 4,464,039 - HSERO_RS19480 0.12 +0.0 4,464,039 - HSERO_RS19480 0.12 +0.3
Or see this region's nucleotide sequence