Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05905 and HSERO_RS05910 are separated by 72 nucleotides HSERO_RS05910 and HSERO_RS05915 are separated by 51 nucleotides HSERO_RS05915 and HSERO_RS05920 overlap by 4 nucleotides HSERO_RS05920 and HSERO_RS05925 are separated by 39 nucleotides
HSERO_RS05905: HSERO_RS05905 - barnase inhibitor, at 1,342,540 to 1,342,938
_RS05905
HSERO_RS05910: HSERO_RS05910 - phosphoribosylglycinamide formyltransferase, at 1,343,011 to 1,343,673
_RS05910
HSERO_RS05915: HSERO_RS05915 - SAM-dependent methyltransferase, at 1,343,725 to 1,344,984
_RS05915
HSERO_RS05920: HSERO_RS05920 - endonuclease, at 1,344,981 to 1,345,565
_RS05920
HSERO_RS05925: HSERO_RS05925 - mechanosensitive ion channel protein, at 1,345,605 to 1,346,963
_RS05925
Position (kb) 1343
1344
1345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1343.166 kb on + strand, within HSERO_RS05910 at 1343.286 kb on + strand, within HSERO_RS05910 at 1343.831 kb on + strand at 1343.912 kb on + strand, within HSERO_RS05915 at 1343.975 kb on - strand, within HSERO_RS05915 at 1343.984 kb on - strand at 1344.134 kb on + strand, within HSERO_RS05915 at 1344.144 kb on + strand, within HSERO_RS05915 at 1344.326 kb on - strand, within HSERO_RS05915 at 1344.326 kb on - strand, within HSERO_RS05915 at 1344.722 kb on + strand, within HSERO_RS05915 at 1344.772 kb on + strand, within HSERO_RS05915 at 1344.897 kb on + strand at 1344.980 kb on - strand at 1345.258 kb on - strand, within HSERO_RS05920 at 1345.452 kb on + strand, within HSERO_RS05920 at 1345.465 kb on - strand, within HSERO_RS05920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 1,343,166 + HSERO_RS05910 0.23 -1.4 1,343,286 + HSERO_RS05910 0.41 -2.9 1,343,831 + +0.3 1,343,912 + HSERO_RS05915 0.15 +0.2 1,343,975 - HSERO_RS05915 0.20 +0.5 1,343,984 - -0.5 1,344,134 + HSERO_RS05915 0.32 +1.0 1,344,144 + HSERO_RS05915 0.33 -0.0 1,344,326 - HSERO_RS05915 0.48 -0.4 1,344,326 - HSERO_RS05915 0.48 +1.4 1,344,722 + HSERO_RS05915 0.79 +2.1 1,344,772 + HSERO_RS05915 0.83 -0.5 1,344,897 + -0.0 1,344,980 - +0.0 1,345,258 - HSERO_RS05920 0.47 -0.2 1,345,452 + HSERO_RS05920 0.81 +1.3 1,345,465 - HSERO_RS05920 0.83 -0.3
Or see this region's nucleotide sequence