Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03165 and BWI76_RS03170 are separated by 17 nucleotides BWI76_RS03170 and BWI76_RS03175 overlap by 4 nucleotides BWI76_RS03175 and BWI76_RS03180 are separated by 550 nucleotides BWI76_RS03180 and BWI76_RS03185 overlap by 4 nucleotides
BWI76_RS03165: BWI76_RS03165 - phage polarity suppression protein, at 654,232 to 654,798
_RS03165
BWI76_RS03170: BWI76_RS03170 - hypothetical protein, at 654,816 to 655,061
_RS03170
BWI76_RS03175: BWI76_RS03175 - hypothetical protein, at 655,058 to 655,795
_RS03175
BWI76_RS03180: BWI76_RS03180 - phage transcriptional regulator, AlpA, at 656,346 to 656,612
_RS03180
BWI76_RS03185: BWI76_RS03185 - CI repressor, at 656,609 to 657,166
_RS03185
Position (kb) 655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 654.249 kb on - strand at 654.249 kb on - strand at 654.321 kb on + strand, within BWI76_RS03165 at 654.416 kb on - strand, within BWI76_RS03165 at 654.420 kb on + strand, within BWI76_RS03165 at 654.436 kb on + strand, within BWI76_RS03165 at 654.518 kb on - strand, within BWI76_RS03165 at 654.536 kb on - strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.674 kb on + strand, within BWI76_RS03165 at 654.682 kb on - strand, within BWI76_RS03165 at 654.807 kb on - strand at 654.843 kb on + strand, within BWI76_RS03170 at 654.932 kb on + strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 655.324 kb on + strand, within BWI76_RS03175 at 655.344 kb on - strand, within BWI76_RS03175 at 655.377 kb on - strand, within BWI76_RS03175 at 655.421 kb on - strand, within BWI76_RS03175 at 655.481 kb on - strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.733 kb on + strand at 656.051 kb on + strand at 656.059 kb on - strand at 656.059 kb on - strand at 656.292 kb on + strand at 656.402 kb on + strand, within BWI76_RS03180 at 656.402 kb on + strand, within BWI76_RS03180 at 656.410 kb on - strand, within BWI76_RS03180 at 656.784 kb on - strand, within BWI76_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 654,249 - +1.8 654,249 - +0.2 654,321 + BWI76_RS03165 0.16 -0.0 654,416 - BWI76_RS03165 0.32 +0.7 654,420 + BWI76_RS03165 0.33 +2.1 654,436 + BWI76_RS03165 0.36 -0.0 654,518 - BWI76_RS03165 0.50 +0.1 654,536 - BWI76_RS03165 0.54 -0.3 654,663 + BWI76_RS03165 0.76 -1.4 654,663 + BWI76_RS03165 0.76 -0.2 654,663 + BWI76_RS03165 0.76 +0.1 654,671 - BWI76_RS03165 0.77 +0.4 654,671 - BWI76_RS03165 0.77 -2.5 654,674 + BWI76_RS03165 0.78 +0.3 654,682 - BWI76_RS03165 0.79 -0.7 654,807 - -0.4 654,843 + BWI76_RS03170 0.11 -0.3 654,932 + BWI76_RS03170 0.47 +0.2 654,940 - BWI76_RS03170 0.50 +0.2 654,940 - BWI76_RS03170 0.50 +0.3 655,324 + BWI76_RS03175 0.36 -0.4 655,344 - BWI76_RS03175 0.39 +0.2 655,377 - BWI76_RS03175 0.43 -0.0 655,421 - BWI76_RS03175 0.49 +1.1 655,481 - BWI76_RS03175 0.57 +0.3 655,714 + BWI76_RS03175 0.89 +0.5 655,714 + BWI76_RS03175 0.89 +1.1 655,733 + -0.4 656,051 + +0.2 656,059 - +0.6 656,059 - -0.1 656,292 + -0.3 656,402 + BWI76_RS03180 0.21 -0.9 656,402 + BWI76_RS03180 0.21 -0.1 656,410 - BWI76_RS03180 0.24 -1.2 656,784 - BWI76_RS03185 0.31 +0.1
Or see this region's nucleotide sequence