Strain Fitness in Shewanella oneidensis MR-1 around SO2093

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
2,187,537	-	hypD	SO2091	0.44	+0.2
2,187,557	+	hypD	SO2091	0.46	+0.8
2,187,566	+	hypD	SO2091	0.47	+0.1
2,187,595	-	hypD	SO2091	0.49	+0.9
2,187,718	+	hypD	SO2091	0.60	-0.1
2,187,780	+	hypD	SO2091	0.66	-0.3
2,187,880	+	hypD	SO2091	0.74	+1.1
2,187,880	+	hypD	SO2091	0.74	+0.9
2,187,903	+	hypD	SO2091	0.76	-1.8
2,187,949	+	hypD	SO2091	0.80	-1.7
2,188,070	-				-0.6
2,188,075	+				-0.3
2,188,289	-	hypC	SO2092	0.22	-0.5
2,188,404	+	hypC	SO2092	0.69	-0.3
2,188,404	+	hypC	SO2092	0.69	-2.6
2,188,404	+	hypC	SO2092	0.69	-0.7
2,188,509	-				+1.4
2,188,853	+	hypB	SO2093	0.47	+0.5
2,188,861	-	hypB	SO2093	0.48	-2.0
2,188,861	-	hypB	SO2093	0.48	-0.3
2,188,954	+	hypB	SO2093	0.60	+0.1
2,188,975	+	hypB	SO2093	0.62	-0.4
2,188,996	+	hypB	SO2093	0.65	-0.2
2,189,004	-	hypB	SO2093	0.66	+0.6
2,189,060	-	hypB	SO2093	0.73	-2.2
2,189,079	+	hypB	SO2093	0.75	-2.5
2,189,079	+	hypB	SO2093	0.75	-0.5
2,189,158	-	hypB	SO2093	0.85	-0.4
2,189,472	-				+0.1
2,189,513	+				+0.6
2,189,545	-				-0.9
2,189,685	+				-1.0
2,189,721	+				-0.5
2,189,721	+				-0.1
2,189,729	-				+0.1
2,189,781	+	hypF	SO2094	0.12	+0.3
2,190,027	-	hypF	SO2094	0.22	+2.2
2,190,222	+	hypF	SO2094	0.30	-0.1
2,190,267	-	hypF	SO2094	0.32	+0.5