Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0551 and SO0552 are separated by 6 nucleotides SO0552 and SO0553 are separated by 151 nucleotides SO0553 and SO0554 are separated by 220 nucleotides SO0554 and SO0555 are separated by 8 nucleotides
SO0551: SO0551 - conserved hypothetical protein (NCBI ptt file), at 572,668 to 573,177
SO0551
SO0552: SO0552 - hypothetical protein (NCBI ptt file), at 573,184 to 573,498
SO0552
SO0553: SO0553 - hypothetical protein (NCBI ptt file), at 573,650 to 574,006
SO0553
SO0554: SO0554 - hypothetical protein (NCBI ptt file), at 574,227 to 574,751
SO0554
SO0555: SO0555 - conserved hypothetical protein (NCBI ptt file), at 574,760 to 576,514
SO0555
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.727 kb on + strand, within SO0551 at 572.735 kb on - strand, within SO0551 at 572.777 kb on + strand, within SO0551 at 572.844 kb on - strand, within SO0551 at 572.856 kb on - strand, within SO0551 at 572.934 kb on - strand, within SO0551 at 573.326 kb on - strand, within SO0552 at 573.378 kb on + strand, within SO0552 at 573.386 kb on - strand, within SO0552 at 573.386 kb on - strand, within SO0552 at 573.400 kb on - strand, within SO0552 at 573.412 kb on + strand, within SO0552 at 573.422 kb on + strand, within SO0552 at 573.472 kb on + strand at 573.480 kb on - strand at 573.480 kb on - strand at 573.480 kb on - strand at 573.485 kb on + strand at 573.555 kb on + strand at 573.555 kb on + strand at 573.688 kb on + strand, within SO0553 at 573.738 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.778 kb on + strand, within SO0553 at 573.784 kb on - strand, within SO0553 at 573.877 kb on + strand, within SO0553 at 573.885 kb on - strand, within SO0553 at 573.979 kb on + strand at 573.991 kb on + strand at 573.991 kb on + strand at 574.142 kb on + strand at 574.150 kb on - strand at 574.199 kb on - strand at 574.199 kb on - strand at 574.257 kb on + strand at 574.257 kb on + strand at 574.265 kb on - strand at 574.265 kb on - strand at 574.267 kb on + strand at 574.267 kb on + strand at 574.270 kb on + strand at 574.270 kb on + strand at 574.270 kb on + strand at 574.275 kb on - strand at 574.278 kb on - strand at 574.282 kb on - strand, within SO0554 at 574.333 kb on - strand, within SO0554 at 574.364 kb on + strand, within SO0554 at 574.499 kb on - strand, within SO0554 at 574.757 kb on + strand at 574.774 kb on - strand at 574.870 kb on + strand at 574.880 kb on + strand at 574.881 kb on - strand at 574.891 kb on + strand at 574.891 kb on + strand at 574.891 kb on + strand at 574.895 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.912 kb on + strand at 574.912 kb on + strand at 574.920 kb on - strand at 574.940 kb on + strand, within SO0555 at 574.978 kb on - strand, within SO0555 at 574.980 kb on + strand, within SO0555 at 574.987 kb on + strand, within SO0555 at 574.995 kb on + strand, within SO0555
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 572,727 + SO0551 0.12 +0.5 572,735 - SO0551 0.13 -0.3 572,777 + SO0551 0.21 -0.7 572,844 - SO0551 0.35 +0.2 572,856 - SO0551 0.37 +0.1 572,934 - SO0551 0.52 -0.9 573,326 - SO0552 0.45 -0.7 573,378 + SO0552 0.62 -0.6 573,386 - SO0552 0.64 -0.4 573,386 - SO0552 0.64 +0.3 573,400 - SO0552 0.69 -0.3 573,412 + SO0552 0.72 +0.0 573,422 + SO0552 0.76 +0.0 573,472 + +0.0 573,480 - -0.7 573,480 - +0.4 573,480 - -0.7 573,485 + -0.1 573,555 + -0.9 573,555 + +0.6 573,688 + SO0553 0.11 -1.6 573,738 - SO0553 0.25 -0.0 573,774 - SO0553 0.35 -0.5 573,774 - SO0553 0.35 -0.1 573,774 - SO0553 0.35 +0.4 573,778 + SO0553 0.36 +0.3 573,784 - SO0553 0.38 -0.8 573,877 + SO0553 0.64 -0.2 573,885 - SO0553 0.66 -0.2 573,979 + +0.2 573,991 + +0.3 573,991 + +0.4 574,142 + +0.6 574,150 - -1.5 574,199 - +1.0 574,199 - +0.7 574,257 + -0.6 574,257 + -0.5 574,265 - -0.3 574,265 - -1.2 574,267 + -1.1 574,267 + -2.5 574,270 + -1.1 574,270 + +0.4 574,270 + +0.5 574,275 - +0.2 574,278 - +1.6 574,282 - SO0554 0.10 -0.3 574,333 - SO0554 0.20 +1.2 574,364 + SO0554 0.26 -1.3 574,499 - SO0554 0.52 -0.9 574,757 + -0.0 574,774 - -0.7 574,870 + -0.4 574,880 + -0.1 574,881 - +2.6 574,891 + -0.4 574,891 + -1.5 574,891 + -1.2 574,895 - +1.6 574,899 - +0.7 574,899 - -0.7 574,912 + +0.4 574,912 + -0.3 574,920 - +0.6 574,940 + SO0555 0.10 -0.1 574,978 - SO0555 0.12 +0.3 574,980 + SO0555 0.13 -1.1 574,987 + SO0555 0.13 +0.7 574,995 + SO0555 0.13 +0.1
Or see this region's nucleotide sequence