Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0376 and SO0377 are separated by 398 nucleotides SO0377 and SO0378 are separated by 105 nucleotides SO0378 and SO0379 are separated by 39 nucleotides SO0379 and hsdR-1 are separated by 2 nucleotides
SO_0376: SO_0376 - no description, at 388,489 to 388,770
_0376
SO0377: SO0377 - hypothetical protein (NCBI ptt file), at 389,169 to 389,462
SO0377
SO0378: SO0378 - ISSod4, transposase (NCBI ptt file), at 389,568 to 390,770
SO0378
SO0379: SO0379 - conserved hypothetical protein (NCBI ptt file), at 390,810 to 391,523
SO0379
SO0380: hsdR-1 - type I restriction-modification system, R subunit (NCBI ptt file), at 391,526 to 394,627
hsdR-1
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1 at 388.600 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.607 kb on + strand, within SO_0376 at 388.607 kb on - strand, within SO_0376 at 388.625 kb on + strand, within SO_0376 at 388.668 kb on + strand, within SO_0376 at 388.690 kb on + strand, within SO_0376 at 388.870 kb on + strand at 388.877 kb on + strand at 388.895 kb on - strand at 388.919 kb on + strand at 388.934 kb on + strand at 388.974 kb on - strand at 389.049 kb on - strand at 389.056 kb on + strand at 389.158 kb on + strand at 389.186 kb on + strand at 389.186 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.188 kb on + strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.194 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.196 kb on - strand at 389.267 kb on + strand, within SO0377 at 389.275 kb on - strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.277 kb on + strand, within SO0377 at 389.279 kb on + strand, within SO0377 at 389.285 kb on - strand, within SO0377 at 389.302 kb on + strand, within SO0377 at 389.325 kb on - strand, within SO0377 at 389.336 kb on + strand, within SO0377 at 389.337 kb on + strand, within SO0377 at 389.405 kb on - strand, within SO0377 at 389.407 kb on + strand, within SO0377 at 389.441 kb on + strand at 389.449 kb on - strand at 389.467 kb on + strand at 390.869 kb on + strand at 390.876 kb on - strand at 390.876 kb on - strand at 390.925 kb on - strand, within SO0379 at 390.951 kb on - strand, within SO0379 at 391.084 kb on - strand, within SO0379 at 391.089 kb on - strand, within SO0379 at 391.095 kb on - strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.134 kb on + strand, within SO0379 at 391.142 kb on - strand, within SO0379 at 391.167 kb on + strand, within SO0379 at 391.175 kb on - strand, within SO0379 at 391.219 kb on - strand, within SO0379 at 391.228 kb on - strand, within SO0379 at 391.235 kb on + strand, within SO0379 at 391.265 kb on + strand, within SO0379 at 391.323 kb on + strand, within SO0379 at 391.409 kb on - strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.517 kb on + strand at 391.571 kb on - strand at 391.576 kb on + strand at 391.581 kb on + strand at 391.584 kb on - strand at 391.682 kb on + strand at 391.690 kb on - strand at 391.711 kb on + strand at 391.712 kb on + strand at 391.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 388,600 + SO_0376 0.39 -0.3 388,600 + SO_0376 0.39 -0.4 388,607 + SO_0376 0.42 -1.0 388,607 - SO_0376 0.42 -0.3 388,625 + SO_0376 0.48 -1.1 388,668 + SO_0376 0.63 -2.4 388,690 + SO_0376 0.71 -0.7 388,870 + +0.4 388,877 + +0.1 388,895 - +0.2 388,919 + -0.1 388,934 + -0.6 388,974 - -1.1 389,049 - -1.3 389,056 + +0.0 389,158 + -0.1 389,186 + +0.1 389,186 + -0.6 389,188 + +0.6 389,188 + -0.7 389,188 + -0.1 389,188 + +0.1 389,194 - +0.0 389,194 - -1.0 389,194 - -1.0 389,194 - +0.3 389,196 - -0.6 389,196 - -0.0 389,196 - -0.4 389,267 + SO0377 0.33 -0.8 389,275 - SO0377 0.36 -1.3 389,277 + SO0377 0.37 +1.6 389,277 + SO0377 0.37 -0.3 389,277 + SO0377 0.37 -0.8 389,279 + SO0377 0.37 -1.0 389,285 - SO0377 0.39 +0.2 389,302 + SO0377 0.45 -0.1 389,325 - SO0377 0.53 +0.2 389,336 + SO0377 0.57 -0.8 389,337 + SO0377 0.57 +1.4 389,405 - SO0377 0.80 +0.2 389,407 + SO0377 0.81 +0.6 389,441 + +1.2 389,449 - -0.8 389,467 + +1.1 390,869 + -1.9 390,876 - +0.6 390,876 - -1.2 390,925 - SO0379 0.16 -0.4 390,951 - SO0379 0.20 -0.5 391,084 - SO0379 0.38 -0.6 391,089 - SO0379 0.39 +0.6 391,095 - SO0379 0.40 +0.3 391,124 + SO0379 0.44 -1.3 391,124 + SO0379 0.44 -1.4 391,134 + SO0379 0.45 -2.1 391,142 - SO0379 0.46 +0.6 391,167 + SO0379 0.50 -1.9 391,175 - SO0379 0.51 -1.0 391,219 - SO0379 0.57 -0.4 391,228 - SO0379 0.59 +1.2 391,235 + SO0379 0.60 +1.1 391,265 + SO0379 0.64 -0.7 391,323 + SO0379 0.72 -1.5 391,409 - SO0379 0.84 -1.5 391,447 + SO0379 0.89 -0.4 391,447 + SO0379 0.89 -1.3 391,486 + +0.2 391,486 + +0.4 391,486 + +0.6 391,486 + +0.1 391,494 - -1.2 391,494 - +0.2 391,494 - +0.6 391,494 - -1.9 391,517 + -0.1 391,571 - +0.2 391,576 + +0.2 391,581 + -0.7 391,584 - -0.2 391,682 + +1.2 391,690 - +0.7 391,711 + +0.6 391,712 + -0.4 391,712 + +1.1
Or see this region's nucleotide sequence