Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1107

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrp and Synpcc7942_1106 are separated by 143 nucleotidesSynpcc7942_1106 and Synpcc7942_1107 are separated by 140 nucleotidesSynpcc7942_1107 and Hbs or HU-like are separated by 283 nucleotidesHbs or HU-like and hisC are separated by 18 nucleotides Synpcc7942_1105: mrp - MRP protein-like, at 1,122,449 to 1,123,534 mrp Synpcc7942_1106: Synpcc7942_1106 - hypothetical protein, at 1,123,678 to 1,124,148 _1106 Synpcc7942_1107: Synpcc7942_1107 - TPR repeat, at 1,124,289 to 1,125,089 _1107 Synpcc7942_1108: Hbs or HU-like - bacterial nucleoid protein Hbs, at 1,125,373 to 1,125,648 Hbs or HU-like Synpcc7942_1109: hisC - threonine phosphate decarboxylase, at 1,125,667 to 1,126,740 hisC Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1123.600 kb on + strandat 1123.613 kb on - strandat 1123.652 kb on - strandat 1123.676 kb on + strandat 1123.741 kb on - strand, within Synpcc7942_1106at 1123.888 kb on - strand, within Synpcc7942_1106at 1123.891 kb on + strand, within Synpcc7942_1106at 1123.893 kb on + strand, within Synpcc7942_1106at 1123.949 kb on - strand, within Synpcc7942_1106at 1123.958 kb on - strand, within Synpcc7942_1106at 1124.015 kb on + strand, within Synpcc7942_1106at 1124.040 kb on + strand, within Synpcc7942_1106at 1124.040 kb on + strand, within Synpcc7942_1106at 1124.045 kb on + strand, within Synpcc7942_1106at 1124.047 kb on + strand, within Synpcc7942_1106at 1124.048 kb on - strand, within Synpcc7942_1106at 1124.048 kb on - strand, within Synpcc7942_1106at 1124.053 kb on - strand, within Synpcc7942_1106at 1124.058 kb on - strand, within Synpcc7942_1106at 1124.065 kb on + strand, within Synpcc7942_1106at 1124.084 kb on + strand, within Synpcc7942_1106at 1124.088 kb on + strand, within Synpcc7942_1106at 1124.093 kb on + strand, within Synpcc7942_1106at 1124.093 kb on + strand, within Synpcc7942_1106at 1124.093 kb on + strand, within Synpcc7942_1106at 1124.093 kb on + strand, within Synpcc7942_1106at 1124.096 kb on - strand, within Synpcc7942_1106at 1124.096 kb on - strand, within Synpcc7942_1106at 1124.100 kb on + strand, within Synpcc7942_1106at 1124.101 kb on - strand, within Synpcc7942_1106at 1124.101 kb on - strand, within Synpcc7942_1106at 1124.141 kb on + strandat 1124.146 kb on + strandat 1124.164 kb on - strandat 1124.182 kb on - strandat 1124.182 kb on - strandat 1124.182 kb on - strandat 1124.196 kb on - strandat 1124.204 kb on + strandat 1124.214 kb on + strandat 1124.214 kb on + strandat 1124.214 kb on + strandat 1124.217 kb on - strandat 1124.222 kb on - strandat 1124.225 kb on + strandat 1124.233 kb on - strandat 1124.243 kb on + strandat 1124.308 kb on + strandat 1124.313 kb on + strandat 1124.313 kb on + strandat 1124.314 kb on - strandat 1124.321 kb on + strandat 1124.321 kb on - strandat 1124.322 kb on + strandat 1124.330 kb on - strandat 1124.330 kb on - strandat 1124.346 kb on + strandat 1124.360 kb on - strandat 1124.366 kb on - strandat 1124.400 kb on - strand, within Synpcc7942_1107at 1124.432 kb on + strand, within Synpcc7942_1107at 1124.433 kb on - strand, within Synpcc7942_1107at 1124.453 kb on - strand, within Synpcc7942_1107at 1124.470 kb on + strand, within Synpcc7942_1107at 1124.478 kb on - strand, within Synpcc7942_1107at 1124.478 kb on - strand, within Synpcc7942_1107at 1124.498 kb on - strand, within Synpcc7942_1107at 1124.499 kb on - strand, within Synpcc7942_1107at 1124.503 kb on + strand, within Synpcc7942_1107at 1124.503 kb on + strand, within Synpcc7942_1107at 1124.511 kb on - strand, within Synpcc7942_1107at 1124.513 kb on + strand, within Synpcc7942_1107at 1124.521 kb on - strand, within Synpcc7942_1107at 1124.523 kb on + strand, within Synpcc7942_1107at 1124.523 kb on + strand, within Synpcc7942_1107at 1124.523 kb on + strand, within Synpcc7942_1107at 1124.523 kb on + strand, within Synpcc7942_1107at 1124.523 kb on + strand, within Synpcc7942_1107at 1124.531 kb on - strand, within Synpcc7942_1107at 1124.531 kb on - strand, within Synpcc7942_1107at 1124.531 kb on - strand, within Synpcc7942_1107at 1124.550 kb on + strand, within Synpcc7942_1107at 1124.550 kb on + strand, within Synpcc7942_1107at 1124.563 kb on - strand, within Synpcc7942_1107at 1124.567 kb on - strand, within Synpcc7942_1107at 1124.580 kb on + strand, within Synpcc7942_1107at 1124.580 kb on + strand, within Synpcc7942_1107at 1124.626 kb on - strand, within Synpcc7942_1107at 1124.646 kb on + strand, within Synpcc7942_1107at 1124.653 kb on + strand, within Synpcc7942_1107at 1124.661 kb on - strand, within Synpcc7942_1107at 1124.661 kb on - strand, within Synpcc7942_1107at 1124.661 kb on - strand, within Synpcc7942_1107at 1124.661 kb on - strand, within Synpcc7942_1107at 1124.661 kb on - strand, within Synpcc7942_1107at 1124.680 kb on + strand, within Synpcc7942_1107at 1124.688 kb on - strand, within Synpcc7942_1107at 1124.691 kb on + strand, within Synpcc7942_1107at 1124.693 kb on - strand, within Synpcc7942_1107at 1124.701 kb on + strand, within Synpcc7942_1107at 1124.701 kb on + strand, within Synpcc7942_1107at 1124.701 kb on + strand, within Synpcc7942_1107at 1124.707 kb on + strand, within Synpcc7942_1107at 1124.709 kb on - strand, within Synpcc7942_1107at 1124.709 kb on - strand, within Synpcc7942_1107at 1124.709 kb on - strand, within Synpcc7942_1107at 1124.709 kb on - strand, within Synpcc7942_1107at 1124.709 kb on - strand, within Synpcc7942_1107at 1124.720 kb on - strand, within Synpcc7942_1107at 1124.738 kb on + strand, within Synpcc7942_1107at 1124.753 kb on + strand, within Synpcc7942_1107at 1124.768 kb on + strand, within Synpcc7942_1107at 1124.776 kb on + strand, within Synpcc7942_1107at 1124.776 kb on - strand, within Synpcc7942_1107at 1124.786 kb on - strand, within Synpcc7942_1107at 1124.791 kb on - strand, within Synpcc7942_1107at 1124.812 kb on + strand, within Synpcc7942_1107at 1124.813 kb on + strand, within Synpcc7942_1107at 1124.820 kb on - strand, within Synpcc7942_1107at 1124.821 kb on - strand, within Synpcc7942_1107at 1124.821 kb on - strand, within Synpcc7942_1107at 1124.823 kb on + strand, within Synpcc7942_1107at 1124.866 kb on - strand, within Synpcc7942_1107at 1124.866 kb on - strand, within Synpcc7942_1107at 1124.873 kb on + strand, within Synpcc7942_1107at 1124.873 kb on + strand, within Synpcc7942_1107at 1124.873 kb on + strand, within Synpcc7942_1107at 1124.881 kb on - strand, within Synpcc7942_1107at 1124.881 kb on - strand, within Synpcc7942_1107at 1124.881 kb on - strand, within Synpcc7942_1107at 1124.891 kb on - strand, within Synpcc7942_1107at 1124.891 kb on - strand, within Synpcc7942_1107at 1124.896 kb on - strand, within Synpcc7942_1107at 1124.926 kb on + strand, within Synpcc7942_1107at 1124.937 kb on + strand, within Synpcc7942_1107at 1124.937 kb on + strand, within Synpcc7942_1107at 1124.937 kb on + strand, within Synpcc7942_1107at 1124.942 kb on + strand, within Synpcc7942_1107at 1124.945 kb on - strand, within Synpcc7942_1107at 1124.948 kb on + strand, within Synpcc7942_1107at 1124.950 kb on - strand, within Synpcc7942_1107at 1124.951 kb on - strand, within Synpcc7942_1107at 1124.956 kb on - strand, within Synpcc7942_1107at 1124.963 kb on - strand, within Synpcc7942_1107at 1124.978 kb on - strand, within Synpcc7942_1107at 1124.980 kb on - strand, within Synpcc7942_1107at 1124.986 kb on + strand, within Synpcc7942_1107at 1125.000 kb on + strand, within Synpcc7942_1107at 1125.000 kb on + strand, within Synpcc7942_1107at 1125.036 kb on + strandat 1125.051 kb on + strandat 1125.079 kb on + strandat 1125.079 kb on + strandat 1125.080 kb on - strandat 1125.080 kb on - strandat 1125.087 kb on - strandat 1125.125 kb on + strandat 1125.186 kb on - strandat 1125.186 kb on - strandat 1125.236 kb on + strandat 1125.244 kb on - strandat 1125.244 kb on - strandat 1125.251 kb on + strandat 1125.262 kb on + strandat 1125.263 kb on + strandat 1125.263 kb on + strandat 1125.263 kb on + strandat 1125.273 kb on + strandat 1125.282 kb on - strandat 1125.375 kb on + strandat 1125.375 kb on + strandat 1125.468 kb on + strand, within Hbs or HU-likeat 1125.500 kb on + strand, within Hbs or HU-likeat 1125.518 kb on + strand, within Hbs or HU-likeat 1125.542 kb on + strand, within Hbs or HU-likeat 1125.548 kb on - strand, within Hbs or HU-likeat 1125.631 kb on - strandat 1125.641 kb on + strandat 1125.652 kb on - strandat 1125.664 kb on + strandat 1125.664 kb on + strandat 1125.664 kb on + strandat 1125.672 kb on - strandat 1125.672 kb on - strandat 1125.672 kb on - strandat 1125.675 kb on + strandat 1125.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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1,123,600 + -0.1
1,123,613 - -1.0
1,123,652 - -0.3
1,123,676 + +1.5
1,123,741 - Synpcc7942_1106 0.13 +1.4
1,123,888 - Synpcc7942_1106 0.45 +2.0
1,123,891 + Synpcc7942_1106 0.45 +0.4
1,123,893 + Synpcc7942_1106 0.46 +2.0
1,123,949 - Synpcc7942_1106 0.58 +3.4
1,123,958 - Synpcc7942_1106 0.59 +0.0
1,124,015 + Synpcc7942_1106 0.72 +1.5
1,124,040 + Synpcc7942_1106 0.77 +1.5
1,124,040 + Synpcc7942_1106 0.77 +2.9
1,124,045 + Synpcc7942_1106 0.78 +2.0
1,124,047 + Synpcc7942_1106 0.78 +1.8
1,124,048 - Synpcc7942_1106 0.79 +3.2
1,124,048 - Synpcc7942_1106 0.79 +1.3
1,124,053 - Synpcc7942_1106 0.80 +1.7
1,124,058 - Synpcc7942_1106 0.81 +2.9
1,124,065 + Synpcc7942_1106 0.82 +1.8
1,124,084 + Synpcc7942_1106 0.86 +0.2
1,124,088 + Synpcc7942_1106 0.87 +2.8
1,124,093 + Synpcc7942_1106 0.88 +2.1
1,124,093 + Synpcc7942_1106 0.88 +1.6
1,124,093 + Synpcc7942_1106 0.88 +2.2
1,124,093 + Synpcc7942_1106 0.88 +1.8
1,124,096 - Synpcc7942_1106 0.89 +1.9
1,124,096 - Synpcc7942_1106 0.89 +1.5
1,124,100 + Synpcc7942_1106 0.90 +1.8
1,124,101 - Synpcc7942_1106 0.90 +1.9
1,124,101 - Synpcc7942_1106 0.90 +1.1
1,124,141 + +0.4
1,124,146 + +0.7
1,124,164 - +1.3
1,124,182 - +0.0
1,124,182 - -0.4
1,124,182 - +0.5
1,124,196 - -0.6
1,124,204 + +0.0
1,124,214 + -0.4
1,124,214 + +0.4
1,124,214 + -1.5
1,124,217 - +1.1
1,124,222 - -0.4
1,124,225 + -1.4
1,124,233 - -0.6
1,124,243 + -2.6
1,124,308 + +3.4
1,124,313 + +0.5
1,124,313 + +1.3
1,124,314 - -0.1
1,124,321 + +2.2
1,124,321 - +2.8
1,124,322 + +1.7
1,124,330 - +2.5
1,124,330 - +2.1
1,124,346 + +0.0
1,124,360 - +1.5
1,124,366 - +1.1
1,124,400 - Synpcc7942_1107 0.14 +2.0
1,124,432 + Synpcc7942_1107 0.18 +1.3
1,124,433 - Synpcc7942_1107 0.18 +2.7
1,124,453 - Synpcc7942_1107 0.20 +1.3
1,124,470 + Synpcc7942_1107 0.23 +0.4
1,124,478 - Synpcc7942_1107 0.24 +1.3
1,124,478 - Synpcc7942_1107 0.24 +0.9
1,124,498 - Synpcc7942_1107 0.26 +1.9
1,124,499 - Synpcc7942_1107 0.26 +2.0
1,124,503 + Synpcc7942_1107 0.27 +2.4
1,124,503 + Synpcc7942_1107 0.27 +2.3
1,124,511 - Synpcc7942_1107 0.28 +1.0
1,124,513 + Synpcc7942_1107 0.28 -1.0
1,124,521 - Synpcc7942_1107 0.29 +2.6
1,124,523 + Synpcc7942_1107 0.29 +0.7
1,124,523 + Synpcc7942_1107 0.29 +1.8
1,124,523 + Synpcc7942_1107 0.29 +0.1
1,124,523 + Synpcc7942_1107 0.29 +1.8
1,124,523 + Synpcc7942_1107 0.29 -0.8
1,124,531 - Synpcc7942_1107 0.30 +1.0
1,124,531 - Synpcc7942_1107 0.30 +1.2
1,124,531 - Synpcc7942_1107 0.30 +1.7
1,124,550 + Synpcc7942_1107 0.33 +1.8
1,124,550 + Synpcc7942_1107 0.33 +0.1
1,124,563 - Synpcc7942_1107 0.34 +1.6
1,124,567 - Synpcc7942_1107 0.35 +2.2
1,124,580 + Synpcc7942_1107 0.36 +2.6
1,124,580 + Synpcc7942_1107 0.36 +2.1
1,124,626 - Synpcc7942_1107 0.42 +0.6
1,124,646 + Synpcc7942_1107 0.45 +1.9
1,124,653 + Synpcc7942_1107 0.45 +1.0
1,124,661 - Synpcc7942_1107 0.46 -0.4
1,124,661 - Synpcc7942_1107 0.46 +2.6
1,124,661 - Synpcc7942_1107 0.46 +2.1
1,124,661 - Synpcc7942_1107 0.46 +2.0
1,124,661 - Synpcc7942_1107 0.46 +1.6
1,124,680 + Synpcc7942_1107 0.49 +0.9
1,124,688 - Synpcc7942_1107 0.50 +1.8
1,124,691 + Synpcc7942_1107 0.50 +2.6
1,124,693 - Synpcc7942_1107 0.50 +1.6
1,124,701 + Synpcc7942_1107 0.51 -0.2
1,124,701 + Synpcc7942_1107 0.51 +2.0
1,124,701 + Synpcc7942_1107 0.51 +1.7
1,124,707 + Synpcc7942_1107 0.52 +2.2
1,124,709 - Synpcc7942_1107 0.52 +1.9
1,124,709 - Synpcc7942_1107 0.52 +1.3
1,124,709 - Synpcc7942_1107 0.52 +2.2
1,124,709 - Synpcc7942_1107 0.52 -1.3
1,124,709 - Synpcc7942_1107 0.52 +1.9
1,124,720 - Synpcc7942_1107 0.54 +2.0
1,124,738 + Synpcc7942_1107 0.56 +1.7
1,124,753 + Synpcc7942_1107 0.58 +0.9
1,124,768 + Synpcc7942_1107 0.60 +1.9
1,124,776 + Synpcc7942_1107 0.61 +2.1
1,124,776 - Synpcc7942_1107 0.61 +1.6
1,124,786 - Synpcc7942_1107 0.62 +1.0
1,124,791 - Synpcc7942_1107 0.63 +2.0
1,124,812 + Synpcc7942_1107 0.65 +1.8
1,124,813 + Synpcc7942_1107 0.65 +0.8
1,124,820 - Synpcc7942_1107 0.66 +3.7
1,124,821 - Synpcc7942_1107 0.66 +1.5
1,124,821 - Synpcc7942_1107 0.66 +0.1
1,124,823 + Synpcc7942_1107 0.67 +0.4
1,124,866 - Synpcc7942_1107 0.72 +1.4
1,124,866 - Synpcc7942_1107 0.72 +0.7
1,124,873 + Synpcc7942_1107 0.73 +2.0
1,124,873 + Synpcc7942_1107 0.73 +2.0
1,124,873 + Synpcc7942_1107 0.73 +0.9
1,124,881 - Synpcc7942_1107 0.74 +1.9
1,124,881 - Synpcc7942_1107 0.74 +1.1
1,124,881 - Synpcc7942_1107 0.74 +1.7
1,124,891 - Synpcc7942_1107 0.75 +1.1
1,124,891 - Synpcc7942_1107 0.75 +2.2
1,124,896 - Synpcc7942_1107 0.76 +1.4
1,124,926 + Synpcc7942_1107 0.80 +4.1
1,124,937 + Synpcc7942_1107 0.81 +1.1
1,124,937 + Synpcc7942_1107 0.81 +1.8
1,124,937 + Synpcc7942_1107 0.81 +0.8
1,124,942 + Synpcc7942_1107 0.82 +2.4
1,124,945 - Synpcc7942_1107 0.82 +1.3
1,124,948 + Synpcc7942_1107 0.82 +1.5
1,124,950 - Synpcc7942_1107 0.83 -0.1
1,124,951 - Synpcc7942_1107 0.83 +2.1
1,124,956 - Synpcc7942_1107 0.83 +2.7
1,124,963 - Synpcc7942_1107 0.84 +2.4
1,124,978 - Synpcc7942_1107 0.86 +3.2
1,124,980 - Synpcc7942_1107 0.86 +0.4
1,124,986 + Synpcc7942_1107 0.87 +1.6
1,125,000 + Synpcc7942_1107 0.89 +1.4
1,125,000 + Synpcc7942_1107 0.89 +2.3
1,125,036 + +0.9
1,125,051 + +2.0
1,125,079 + -1.5
1,125,079 + -0.5
1,125,080 - +1.0
1,125,080 - -1.3
1,125,087 - +1.2
1,125,125 + -0.3
1,125,186 - -2.3
1,125,186 - +0.5
1,125,236 + -0.7
1,125,244 - -0.7
1,125,244 - -1.8
1,125,251 + -0.3
1,125,262 + -0.6
1,125,263 + -0.2
1,125,263 + -1.0
1,125,263 + +0.6
1,125,273 + -0.8
1,125,282 - +0.8
1,125,375 + +1.4
1,125,375 + -0.5
1,125,468 + Hbs or HU-like Synpcc7942_1108 0.34 +1.0
1,125,500 + Hbs or HU-like Synpcc7942_1108 0.46 -1.0
1,125,518 + Hbs or HU-like Synpcc7942_1108 0.53 +0.1
1,125,542 + Hbs or HU-like Synpcc7942_1108 0.61 -1.3
1,125,548 - Hbs or HU-like Synpcc7942_1108 0.63 +0.6
1,125,631 - -0.2
1,125,641 + +1.4
1,125,652 - +0.3
1,125,664 + -0.2
1,125,664 + -0.5
1,125,664 + -1.0
1,125,672 - -1.4
1,125,672 - -2.8
1,125,672 - +0.4
1,125,675 + -0.7
1,125,677 - +0.1

Or see this region's nucleotide sequence