Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23620 and HSERO_RS23625 are separated by 18 nucleotides HSERO_RS23625 and HSERO_RS23630 are separated by 3 nucleotides HSERO_RS23630 and HSERO_RS23635 are separated by 68 nucleotides
HSERO_RS23620: HSERO_RS23620 - urease subunit alpha, at 5,415,734 to 5,417,434
_RS23620
HSERO_RS23625: HSERO_RS23625 - urease accessory protein UreE, at 5,417,453 to 5,417,986
_RS23625
HSERO_RS23630: HSERO_RS23630 - urease accessory protein UreF, at 5,417,990 to 5,418,670
_RS23630
HSERO_RS23635: HSERO_RS23635 - urease accessory protein UreG, at 5,418,739 to 5,419,371
_RS23635
Position (kb) 5417
5418 Strain fitness (log2 ratio) -2
-1
0
1 at 5416.502 kb on + strand, within HSERO_RS23620 at 5416.562 kb on + strand, within HSERO_RS23620 at 5416.887 kb on - strand, within HSERO_RS23620 at 5417.080 kb on - strand, within HSERO_RS23620 at 5417.256 kb on + strand, within HSERO_RS23620 at 5417.357 kb on - strand at 5417.520 kb on - strand, within HSERO_RS23625 at 5417.592 kb on + strand, within HSERO_RS23625 at 5417.600 kb on - strand, within HSERO_RS23625 at 5417.609 kb on + strand, within HSERO_RS23625 at 5417.650 kb on - strand, within HSERO_RS23625 at 5417.980 kb on + strand at 5418.068 kb on + strand, within HSERO_RS23630 at 5418.077 kb on - strand, within HSERO_RS23630 at 5418.110 kb on - strand, within HSERO_RS23630 at 5418.140 kb on - strand, within HSERO_RS23630 at 5418.878 kb on - strand, within HSERO_RS23635
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 5,416,502 + HSERO_RS23620 0.45 -1.0 5,416,562 + HSERO_RS23620 0.49 +0.0 5,416,887 - HSERO_RS23620 0.68 -0.1 5,417,080 - HSERO_RS23620 0.79 +0.5 5,417,256 + HSERO_RS23620 0.89 -1.8 5,417,357 - +0.4 5,417,520 - HSERO_RS23625 0.13 +0.1 5,417,592 + HSERO_RS23625 0.26 -0.0 5,417,600 - HSERO_RS23625 0.28 +1.1 5,417,609 + HSERO_RS23625 0.29 -0.1 5,417,650 - HSERO_RS23625 0.37 +0.1 5,417,980 + -0.1 5,418,068 + HSERO_RS23630 0.11 -1.5 5,418,077 - HSERO_RS23630 0.13 -0.5 5,418,110 - HSERO_RS23630 0.18 +0.6 5,418,140 - HSERO_RS23630 0.22 -0.4 5,418,878 - HSERO_RS23635 0.22 -0.2
Or see this region's nucleotide sequence