Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18125 and HSERO_RS18130 are separated by 36 nucleotides HSERO_RS18130 and HSERO_RS18135 are separated by 61 nucleotides
HSERO_RS18125: HSERO_RS18125 - alkylhydroperoxidase, at 4,163,430 to 4,163,996
_RS18125
HSERO_RS18130: HSERO_RS18130 - nucleoside 2-deoxyribosyltransferase, at 4,164,033 to 4,164,533
_RS18130
HSERO_RS18135: HSERO_RS18135 - acyl-CoA dehydrogenase, at 4,164,595 to 4,167,069
_RS18135
Position (kb) 4164
4165
4166
4167
4168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.677 kb on - strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.782 kb on - strand at 4163.804 kb on + strand, within HSERO_RS18125 at 4163.845 kb on - strand, within HSERO_RS18125 at 4163.860 kb on - strand, within HSERO_RS18125 at 4164.039 kb on - strand at 4164.088 kb on + strand, within HSERO_RS18130 at 4164.116 kb on + strand, within HSERO_RS18130 at 4164.155 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.195 kb on + strand, within HSERO_RS18130 at 4164.450 kb on - strand, within HSERO_RS18130 at 4164.468 kb on + strand, within HSERO_RS18130 at 4164.494 kb on + strand at 4164.534 kb on + strand at 4164.579 kb on + strand at 4164.579 kb on + strand at 4164.587 kb on - strand at 4164.818 kb on - strand at 4164.961 kb on - strand, within HSERO_RS18135 at 4165.083 kb on + strand, within HSERO_RS18135 at 4165.205 kb on + strand, within HSERO_RS18135 at 4165.305 kb on - strand, within HSERO_RS18135 at 4165.447 kb on + strand, within HSERO_RS18135 at 4165.567 kb on + strand, within HSERO_RS18135 at 4165.692 kb on + strand, within HSERO_RS18135 at 4165.723 kb on - strand, within HSERO_RS18135 at 4165.855 kb on - strand, within HSERO_RS18135 at 4166.374 kb on - strand, within HSERO_RS18135 at 4166.472 kb on + strand, within HSERO_RS18135 at 4166.472 kb on + strand, within HSERO_RS18135 at 4166.688 kb on + strand, within HSERO_RS18135 at 4166.775 kb on - strand, within HSERO_RS18135 at 4166.839 kb on + strand at 4166.908 kb on + strand at 4166.926 kb on + strand at 4167.051 kb on + strand at 4167.192 kb on + strand at 4167.263 kb on + strand at 4167.268 kb on + strand at 4167.268 kb on + strand at 4167.368 kb on - strand at 4167.647 kb on + strand at 4167.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 4,163,612 + HSERO_RS18125 0.32 +1.5 4,163,612 + HSERO_RS18125 0.32 -0.5 4,163,677 - HSERO_RS18125 0.44 +0.7 4,163,725 + HSERO_RS18125 0.52 +0.2 4,163,725 + HSERO_RS18125 0.52 +1.3 4,163,782 - -1.1 4,163,804 + HSERO_RS18125 0.66 -0.1 4,163,845 - HSERO_RS18125 0.73 +0.8 4,163,860 - HSERO_RS18125 0.76 +0.3 4,164,039 - +0.8 4,164,088 + HSERO_RS18130 0.11 -0.2 4,164,116 + HSERO_RS18130 0.17 +0.0 4,164,155 - HSERO_RS18130 0.24 +2.0 4,164,159 - HSERO_RS18130 0.25 +0.5 4,164,159 - HSERO_RS18130 0.25 -0.2 4,164,195 + HSERO_RS18130 0.32 -0.1 4,164,450 - HSERO_RS18130 0.83 +0.0 4,164,468 + HSERO_RS18130 0.87 +0.4 4,164,494 + +0.6 4,164,534 + -0.6 4,164,579 + -0.7 4,164,579 + +0.0 4,164,587 - +0.1 4,164,818 - -0.4 4,164,961 - HSERO_RS18135 0.15 +0.6 4,165,083 + HSERO_RS18135 0.20 +0.1 4,165,205 + HSERO_RS18135 0.25 -0.2 4,165,305 - HSERO_RS18135 0.29 +0.5 4,165,447 + HSERO_RS18135 0.34 +1.1 4,165,567 + HSERO_RS18135 0.39 +0.5 4,165,692 + HSERO_RS18135 0.44 -1.4 4,165,723 - HSERO_RS18135 0.46 +0.0 4,165,855 - HSERO_RS18135 0.51 -0.1 4,166,374 - HSERO_RS18135 0.72 +1.2 4,166,472 + HSERO_RS18135 0.76 -3.5 4,166,472 + HSERO_RS18135 0.76 +0.3 4,166,688 + HSERO_RS18135 0.85 -0.1 4,166,775 - HSERO_RS18135 0.88 -0.2 4,166,839 + -0.4 4,166,908 + -0.1 4,166,926 + -0.7 4,167,051 + -0.7 4,167,192 + -0.2 4,167,263 + -0.1 4,167,268 + +0.8 4,167,268 + -1.6 4,167,368 - -0.3 4,167,647 + -0.2 4,167,647 + -0.1
Or see this region's nucleotide sequence