Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02070 and HSERO_RS02075 overlap by 11 nucleotides HSERO_RS02075 and HSERO_RS02080 are separated by 70 nucleotides HSERO_RS02080 and HSERO_RS02085 overlap by 4 nucleotides
HSERO_RS02070: HSERO_RS02070 - deoxyribodipyrimidine photolyase, at 452,261 to 453,463
_RS02070
HSERO_RS02075: HSERO_RS02075 - hypothetical protein, at 453,453 to 453,866
_RS02075
HSERO_RS02080: HSERO_RS02080 - Holliday junction resolvase, at 453,937 to 454,479
_RS02080
HSERO_RS02085: HSERO_RS02085 - membrane protein, at 454,476 to 455,417
_RS02085
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1 at 452.973 kb on + strand, within HSERO_RS02070 at 453.009 kb on + strand, within HSERO_RS02070 at 453.251 kb on + strand, within HSERO_RS02070 at 453.328 kb on - strand, within HSERO_RS02070 at 453.366 kb on - strand at 453.443 kb on + strand at 453.606 kb on + strand, within HSERO_RS02075 at 453.702 kb on + strand, within HSERO_RS02075 at 453.755 kb on + strand, within HSERO_RS02075 at 453.814 kb on + strand, within HSERO_RS02075 at 453.875 kb on - strand at 454.001 kb on + strand, within HSERO_RS02080 at 454.373 kb on - strand, within HSERO_RS02080 at 454.879 kb on - strand, within HSERO_RS02085 at 454.949 kb on + strand, within HSERO_RS02085 at 454.957 kb on + strand, within HSERO_RS02085 at 454.965 kb on - strand, within HSERO_RS02085 at 455.086 kb on + strand, within HSERO_RS02085 at 455.131 kb on + strand, within HSERO_RS02085 at 455.209 kb on + strand, within HSERO_RS02085 at 455.209 kb on + strand, within HSERO_RS02085 at 455.227 kb on + strand, within HSERO_RS02085 at 455.239 kb on + strand, within HSERO_RS02085 at 455.275 kb on + strand, within HSERO_RS02085 at 455.456 kb on - strand at 455.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 452,973 + HSERO_RS02070 0.59 -0.6 453,009 + HSERO_RS02070 0.62 +0.3 453,251 + HSERO_RS02070 0.82 -0.7 453,328 - HSERO_RS02070 0.89 -0.6 453,366 - -0.8 453,443 + +0.0 453,606 + HSERO_RS02075 0.37 +0.8 453,702 + HSERO_RS02075 0.60 +0.3 453,755 + HSERO_RS02075 0.73 +0.9 453,814 + HSERO_RS02075 0.87 +0.2 453,875 - -0.2 454,001 + HSERO_RS02080 0.12 -1.8 454,373 - HSERO_RS02080 0.80 -1.1 454,879 - HSERO_RS02085 0.43 -0.5 454,949 + HSERO_RS02085 0.50 -0.6 454,957 + HSERO_RS02085 0.51 -0.1 454,965 - HSERO_RS02085 0.52 +0.0 455,086 + HSERO_RS02085 0.65 -0.2 455,131 + HSERO_RS02085 0.70 -0.6 455,209 + HSERO_RS02085 0.78 +0.9 455,209 + HSERO_RS02085 0.78 +0.9 455,227 + HSERO_RS02085 0.80 -1.0 455,239 + HSERO_RS02085 0.81 +0.4 455,275 + HSERO_RS02085 0.85 -2.4 455,456 - -0.6 455,473 + -0.0
Or see this region's nucleotide sequence