Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02050 and HSERO_RS02055 are separated by 178 nucleotides HSERO_RS02055 and HSERO_RS02060 are separated by 97 nucleotides HSERO_RS02060 and HSERO_RS02065 are separated by 111 nucleotides
HSERO_RS02050: HSERO_RS02050 - tRNA-dihydrouridine synthase B, at 447,600 to 448,622
_RS02050
HSERO_RS02055: HSERO_RS02055 - Fis family transcriptional regulator, at 448,801 to 449,034
_RS02055
HSERO_RS02060: HSERO_RS02060 - purine biosynthesis protein purH, at 449,132 to 450,703
_RS02060
HSERO_RS02065: HSERO_RS02065 - hypothetical protein, at 450,815 to 451,753
_RS02065
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 448.370 kb on + strand, within HSERO_RS02050 at 448.647 kb on + strand at 448.647 kb on + strand at 448.662 kb on + strand at 448.670 kb on - strand at 448.727 kb on - strand at 448.770 kb on - strand at 448.770 kb on - strand at 448.780 kb on - strand at 449.066 kb on - strand at 450.792 kb on + strand at 450.821 kb on - strand at 450.821 kb on - strand at 451.274 kb on - strand, within HSERO_RS02065 at 451.338 kb on - strand, within HSERO_RS02065 at 451.474 kb on + strand, within HSERO_RS02065 at 451.650 kb on - strand, within HSERO_RS02065
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 448,370 + HSERO_RS02050 0.75 +0.5 448,647 + +0.8 448,647 + -0.1 448,662 + -0.2 448,670 - -0.3 448,727 - -0.8 448,770 - +1.0 448,770 - -0.8 448,780 - +2.7 449,066 - -2.9 450,792 + +0.7 450,821 - -0.0 450,821 - -0.1 451,274 - HSERO_RS02065 0.49 +1.2 451,338 - HSERO_RS02065 0.56 +0.0 451,474 + HSERO_RS02065 0.70 -1.1 451,650 - HSERO_RS02065 0.89 +1.2
Or see this region's nucleotide sequence