Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01495 and HSERO_RS01500 are separated by 116 nucleotides HSERO_RS01500 and HSERO_RS01505 overlap by 4 nucleotides
HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328
_RS01495
HSERO_RS01500: HSERO_RS01500 - transketolase, at 325,445 to 326,263
_RS01500
HSERO_RS01505: HSERO_RS01505 - transketolase, at 326,260 to 327,225
_RS01505
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.567 kb on + strand, within HSERO_RS01495 at 324.634 kb on + strand, within HSERO_RS01495 at 324.689 kb on + strand, within HSERO_RS01495 at 324.697 kb on - strand, within HSERO_RS01495 at 324.804 kb on + strand, within HSERO_RS01495 at 324.971 kb on + strand, within HSERO_RS01495 at 324.971 kb on + strand, within HSERO_RS01495 at 325.065 kb on + strand, within HSERO_RS01495 at 325.067 kb on + strand, within HSERO_RS01495 at 325.166 kb on - strand, within HSERO_RS01495 at 325.348 kb on - strand at 325.388 kb on + strand at 325.803 kb on + strand, within HSERO_RS01500 at 325.811 kb on - strand, within HSERO_RS01500 at 325.816 kb on - strand, within HSERO_RS01500 at 325.877 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.225 kb on - strand at 326.330 kb on + strand at 326.476 kb on + strand, within HSERO_RS01505 at 326.814 kb on + strand, within HSERO_RS01505 at 326.899 kb on - strand, within HSERO_RS01505 at 326.996 kb on - strand, within HSERO_RS01505 at 327.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB remove 324,567 + HSERO_RS01495 0.50 +0.3 324,634 + HSERO_RS01495 0.54 -1.2 324,689 + HSERO_RS01495 0.58 -0.7 324,697 - HSERO_RS01495 0.59 -0.3 324,804 + HSERO_RS01495 0.66 -0.4 324,971 + HSERO_RS01495 0.77 -1.3 324,971 + HSERO_RS01495 0.77 -1.1 325,065 + HSERO_RS01495 0.83 -0.6 325,067 + HSERO_RS01495 0.83 +0.4 325,166 - HSERO_RS01495 0.89 +0.2 325,348 - +0.2 325,388 + +0.2 325,803 + HSERO_RS01500 0.44 -0.8 325,811 - HSERO_RS01500 0.45 +1.1 325,816 - HSERO_RS01500 0.45 +1.3 325,877 - HSERO_RS01500 0.53 -0.1 326,145 - HSERO_RS01500 0.85 -0.3 326,145 - HSERO_RS01500 0.85 +1.8 326,225 - -0.5 326,330 + +1.2 326,476 + HSERO_RS01505 0.22 -1.9 326,814 + HSERO_RS01505 0.57 -0.2 326,899 - HSERO_RS01505 0.66 +1.4 326,996 - HSERO_RS01505 0.76 -1.1 327,181 + -0.0
Or see this region's nucleotide sequence