Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24720

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotidesBWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotides BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334 _RS24715 BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904 _RS24720 BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486 _RS24725 Position (kb) 5155 5156Strain fitness (log2 ratio) -1 0 1 2 3at 5154.824 kb on + strand, within BWI76_RS24715at 5154.837 kb on + strand, within BWI76_RS24715at 5155.006 kb on + strand, within BWI76_RS24715at 5155.365 kb on + strandat 5155.632 kb on - strand, within BWI76_RS24720at 5155.811 kb on + strand, within BWI76_RS24720at 5155.886 kb on - strandat 5156.052 kb on + strandat 5156.054 kb on + strandat 5156.054 kb on + strandat 5156.088 kb on - strandat 5156.090 kb on - strandat 5156.278 kb on + strand, within BWI76_RS24725at 5156.298 kb on - strand, within BWI76_RS24725at 5156.325 kb on + strand, within BWI76_RS24725at 5156.497 kb on - strand, within BWI76_RS24725at 5156.827 kb on - strand, within BWI76_RS24725at 5156.901 kb on - strand, within BWI76_RS24725

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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5,154,824 + BWI76_RS24715 0.59 +0.2
5,154,837 + BWI76_RS24715 0.60 -0.3
5,155,006 + BWI76_RS24715 0.74 -1.0
5,155,365 + +0.2
5,155,632 - BWI76_RS24720 0.51 -0.7
5,155,811 + BWI76_RS24720 0.83 -0.6
5,155,886 - +0.1
5,156,052 + +0.3
5,156,054 + -0.5
5,156,054 + +2.8
5,156,088 - +0.6
5,156,090 - +0.5
5,156,278 + BWI76_RS24725 0.19 +0.3
5,156,298 - BWI76_RS24725 0.20 -0.5
5,156,325 + BWI76_RS24725 0.22 -0.5
5,156,497 - BWI76_RS24725 0.33 +0.4
5,156,827 - BWI76_RS24725 0.56 -1.0
5,156,901 - BWI76_RS24725 0.61 -0.1

Or see this region's nucleotide sequence