Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22870

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22865 and BWI76_RS22870 are separated by 111 nucleotidesBWI76_RS22870 and BWI76_RS22875 are separated by 536 nucleotides BWI76_RS22865: BWI76_RS22865 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 4,769,917 to 4,770,762 _RS22865 BWI76_RS22870: BWI76_RS22870 - LOG family protein, at 4,770,874 to 4,772,241 _RS22870 BWI76_RS22875: BWI76_RS22875 - serine transporter, at 4,772,778 to 4,774,067 _RS22875 Position (kb) 4770 4771 4772 4773Strain fitness (log2 ratio) -1 0 1at 4769.880 kb on - strandat 4769.948 kb on - strandat 4770.001 kb on - strandat 4770.003 kb on + strand, within BWI76_RS22865at 4770.011 kb on - strand, within BWI76_RS22865at 4770.061 kb on - strand, within BWI76_RS22865at 4770.091 kb on + strand, within BWI76_RS22865at 4770.099 kb on + strand, within BWI76_RS22865at 4770.399 kb on + strand, within BWI76_RS22865at 4770.415 kb on - strand, within BWI76_RS22865at 4770.442 kb on + strand, within BWI76_RS22865at 4770.830 kb on + strandat 4770.892 kb on - strandat 4771.221 kb on - strand, within BWI76_RS22870at 4771.287 kb on + strand, within BWI76_RS22870at 4771.295 kb on + strand, within BWI76_RS22870at 4771.635 kb on - strand, within BWI76_RS22870at 4771.784 kb on + strand, within BWI76_RS22870at 4771.916 kb on - strand, within BWI76_RS22870at 4771.989 kb on + strand, within BWI76_RS22870at 4772.059 kb on - strand, within BWI76_RS22870at 4772.103 kb on - strand, within BWI76_RS22870at 4772.186 kb on + strandat 4772.217 kb on - strandat 4772.286 kb on - strandat 4772.527 kb on - strandat 4772.785 kb on - strandat 4772.889 kb on + strandat 4772.971 kb on + strand, within BWI76_RS22875at 4773.154 kb on + strand, within BWI76_RS22875

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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4,769,880 - +0.2
4,769,948 - -1.1
4,770,001 - -0.3
4,770,003 + BWI76_RS22865 0.10 -0.6
4,770,011 - BWI76_RS22865 0.11 -1.0
4,770,061 - BWI76_RS22865 0.17 -1.1
4,770,091 + BWI76_RS22865 0.21 -0.2
4,770,099 + BWI76_RS22865 0.22 +0.1
4,770,399 + BWI76_RS22865 0.57 -0.3
4,770,415 - BWI76_RS22865 0.59 +0.6
4,770,442 + BWI76_RS22865 0.62 +0.6
4,770,830 + -1.0
4,770,892 - -0.4
4,771,221 - BWI76_RS22870 0.25 +0.0
4,771,287 + BWI76_RS22870 0.30 -0.1
4,771,295 + BWI76_RS22870 0.31 +1.3
4,771,635 - BWI76_RS22870 0.56 -0.1
4,771,784 + BWI76_RS22870 0.67 +0.9
4,771,916 - BWI76_RS22870 0.76 +1.3
4,771,989 + BWI76_RS22870 0.82 +0.1
4,772,059 - BWI76_RS22870 0.87 -0.4
4,772,103 - BWI76_RS22870 0.90 +0.0
4,772,186 + -0.0
4,772,217 - +1.6
4,772,286 - -0.3
4,772,527 - +0.6
4,772,785 - +0.4
4,772,889 + +0.2
4,772,971 + BWI76_RS22875 0.15 -0.1
4,773,154 + BWI76_RS22875 0.29 +0.2

Or see this region's nucleotide sequence