Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16635 and BWI76_RS16640 are separated by 225 nucleotides BWI76_RS16640 and BWI76_RS16645 are separated by 9 nucleotides BWI76_RS16645 and BWI76_RS16650 are separated by 93 nucleotides BWI76_RS16650 and BWI76_RS16655 are separated by 30 nucleotides
BWI76_RS16635: BWI76_RS16635 - carbonate dehydratase, at 3,444,213 to 3,444,848
_RS16635
BWI76_RS16640: BWI76_RS16640 - threonine transporter, at 3,445,074 to 3,445,703
_RS16640
BWI76_RS16645: BWI76_RS16645 - DeoR family transcriptional regulator, at 3,445,713 to 3,446,483
_RS16645
BWI76_RS16650: BWI76_RS16650 - glyoxalase I, nickel isomerase, at 3,446,577 to 3,446,960
_RS16650
BWI76_RS16655: BWI76_RS16655 - CatA-like O-acetyltransferase, at 3,446,991 to 3,447,630
_RS16655
Position (kb)
3445
3446
3447 Strain fitness (log2 ratio)
-1
0
1 at 3444.738 kb on - strand, within BWI76_RS16635 at 3444.963 kb on + strand at 3445.112 kb on - strand at 3445.124 kb on + strand at 3445.320 kb on - strand, within BWI76_RS16640 at 3445.342 kb on - strand, within BWI76_RS16640 at 3446.115 kb on - strand, within BWI76_RS16645 at 3446.228 kb on - strand, within BWI76_RS16645 at 3446.228 kb on - strand, within BWI76_RS16645 at 3446.757 kb on - strand, within BWI76_RS16650 at 3446.960 kb on + strand at 3446.981 kb on + strand at 3447.073 kb on + strand, within BWI76_RS16655 at 3447.131 kb on - strand, within BWI76_RS16655 at 3447.451 kb on - strand, within BWI76_RS16655 at 3447.463 kb on - strand, within BWI76_RS16655
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,444,738 - BWI76_RS16635 0.83 -0.6 3,444,963 + -0.7 3,445,112 - -0.5 3,445,124 + +0.0 3,445,320 - BWI76_RS16640 0.39 +0.1 3,445,342 - BWI76_RS16640 0.43 -1.3 3,446,115 - BWI76_RS16645 0.52 -1.6 3,446,228 - BWI76_RS16645 0.67 -0.9 3,446,228 - BWI76_RS16645 0.67 -0.2 3,446,757 - BWI76_RS16650 0.47 -1.3 3,446,960 + -0.6 3,446,981 + -0.1 3,447,073 + BWI76_RS16655 0.13 +0.0 3,447,131 - BWI76_RS16655 0.22 -0.1 3,447,451 - BWI76_RS16655 0.72 -0.0 3,447,463 - BWI76_RS16655 0.74 -0.2
Or see this region's nucleotide sequence