Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13935 and BWI76_RS13940 are separated by 9 nucleotides BWI76_RS13940 and BWI76_RS13945 are separated by 153 nucleotides BWI76_RS13945 and BWI76_RS13950 are separated by 46 nucleotides BWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotides
BWI76_RS13935: BWI76_RS13935 - hypothetical protein, at 2,910,646 to 2,911,080
_RS13935
BWI76_RS13940: BWI76_RS13940 - membrane protein, at 2,911,090 to 2,911,554
_RS13940
BWI76_RS13945: BWI76_RS13945 - lysine exporter protein LysE/YggA, at 2,911,708 to 2,912,340
_RS13945
BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079
_RS13950
BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725
_RS13955
Position (kb)
2911
2912
2913 Strain fitness (log2 ratio)
-1
0
1 at 2910.840 kb on + strand, within BWI76_RS13935 at 2911.090 kb on - strand at 2911.132 kb on - strand at 2911.865 kb on + strand, within BWI76_RS13945 at 2912.087 kb on - strand, within BWI76_RS13945 at 2912.092 kb on + strand, within BWI76_RS13945 at 2912.356 kb on + strand at 2912.671 kb on + strand, within BWI76_RS13950 at 2912.740 kb on + strand, within BWI76_RS13950 at 2912.823 kb on - strand, within BWI76_RS13950 at 2912.962 kb on + strand, within BWI76_RS13950 at 2912.980 kb on - strand, within BWI76_RS13950 at 2913.054 kb on - strand at 2913.300 kb on + strand, within BWI76_RS13955
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 2,910,840 + BWI76_RS13935 0.45 -0.2 2,911,090 - +0.3 2,911,132 - -0.3 2,911,865 + BWI76_RS13945 0.25 -0.8 2,912,087 - BWI76_RS13945 0.60 -1.1 2,912,092 + BWI76_RS13945 0.61 -1.1 2,912,356 + -0.3 2,912,671 + BWI76_RS13950 0.41 +0.8 2,912,740 + BWI76_RS13950 0.51 -0.3 2,912,823 - BWI76_RS13950 0.63 -0.4 2,912,962 + BWI76_RS13950 0.83 -0.7 2,912,980 - BWI76_RS13950 0.86 -0.7 2,913,054 - -0.3 2,913,300 + BWI76_RS13955 0.29 +0.0
Or see this region's nucleotide sequence