Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13060

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13055 and BWI76_RS13060 are separated by 226 nucleotidesBWI76_RS13060 and BWI76_RS13065 are separated by 120 nucleotides BWI76_RS13055: BWI76_RS13055 - NmrA family protein, at 2,723,254 to 2,724,165 _RS13055 BWI76_RS13060: BWI76_RS13060 - glutathione S-transferase, at 2,724,392 to 2,724,997 _RS13060 BWI76_RS13065: BWI76_RS13065 - LysR family transcriptional regulator, at 2,725,118 to 2,725,993 _RS13065 Position (kb) 2724 2725Strain fitness (log2 ratio) -1 0 1at 2723.535 kb on - strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.809 kb on + strand, within BWI76_RS13055at 2724.098 kb on - strandat 2724.139 kb on + strandat 2724.509 kb on + strand, within BWI76_RS13060at 2724.509 kb on + strand, within BWI76_RS13060at 2724.647 kb on - strand, within BWI76_RS13060at 2724.649 kb on + strand, within BWI76_RS13060at 2724.954 kb on - strandat 2725.215 kb on - strand, within BWI76_RS13065at 2725.217 kb on + strand, within BWI76_RS13065at 2725.261 kb on + strand, within BWI76_RS13065at 2725.342 kb on + strand, within BWI76_RS13065at 2725.387 kb on - strand, within BWI76_RS13065at 2725.668 kb on + strand, within BWI76_RS13065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
2,723,535 - BWI76_RS13055 0.31 -0.7
2,723,740 + BWI76_RS13055 0.53 +0.1
2,723,740 + BWI76_RS13055 0.53 -0.2
2,723,809 + BWI76_RS13055 0.61 -0.4
2,724,098 - -0.3
2,724,139 + +0.1
2,724,509 + BWI76_RS13060 0.19 +0.6
2,724,509 + BWI76_RS13060 0.19 -0.2
2,724,647 - BWI76_RS13060 0.42 +0.1
2,724,649 + BWI76_RS13060 0.42 +0.3
2,724,954 - +0.9
2,725,215 - BWI76_RS13065 0.11 -0.6
2,725,217 + BWI76_RS13065 0.11 -1.0
2,725,261 + BWI76_RS13065 0.16 +1.2
2,725,342 + BWI76_RS13065 0.26 -0.3
2,725,387 - BWI76_RS13065 0.31 -0.5
2,725,668 + BWI76_RS13065 0.63 -0.0

Or see this region's nucleotide sequence