Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09565 and BWI76_RS09570 are separated by 11 nucleotides BWI76_RS09570 and BWI76_RS09575 are separated by 34 nucleotides BWI76_RS09575 and BWI76_RS09580 overlap by 93 nucleotides
BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736
_RS09565
BWI76_RS09570: BWI76_RS09570 - hydroxylamine reductase, at 2,001,748 to 2,003,400
_RS09570
BWI76_RS09575: BWI76_RS09575 - hypothetical protein, at 2,003,435 to 2,003,638
_RS09575
BWI76_RS09580: BWI76_RS09580 - surface protein, at 2,003,546 to 2,004,445
_RS09580
Position (kb)
2001
2002
2003
2004 Strain fitness (log2 ratio)
-1
0
1 at 2000.916 kb on - strand, within BWI76_RS09565 at 2000.965 kb on + strand, within BWI76_RS09565 at 2001.280 kb on + strand, within BWI76_RS09565 at 2001.288 kb on - strand, within BWI76_RS09565 at 2001.446 kb on - strand, within BWI76_RS09565 at 2001.562 kb on + strand, within BWI76_RS09565 at 2001.966 kb on + strand, within BWI76_RS09570 at 2002.022 kb on + strand, within BWI76_RS09570 at 2002.096 kb on - strand, within BWI76_RS09570 at 2002.134 kb on - strand, within BWI76_RS09570 at 2002.249 kb on - strand, within BWI76_RS09570 at 2002.592 kb on + strand, within BWI76_RS09570 at 2002.643 kb on + strand, within BWI76_RS09570 at 2002.668 kb on + strand, within BWI76_RS09570 at 2002.859 kb on + strand, within BWI76_RS09570 at 2003.335 kb on - strand at 2003.350 kb on + strand at 2003.373 kb on + strand at 2003.799 kb on - strand, within BWI76_RS09580 at 2003.889 kb on - strand, within BWI76_RS09580 at 2003.908 kb on + strand, within BWI76_RS09580 at 2003.908 kb on + strand, within BWI76_RS09580 at 2003.916 kb on - strand, within BWI76_RS09580 at 2003.916 kb on - strand, within BWI76_RS09580 at 2003.926 kb on - strand, within BWI76_RS09580 at 2003.974 kb on + strand, within BWI76_RS09580 at 2003.995 kb on + strand, within BWI76_RS09580 at 2003.995 kb on + strand, within BWI76_RS09580 at 2004.003 kb on - strand, within BWI76_RS09580 at 2004.003 kb on - strand, within BWI76_RS09580 at 2004.108 kb on + strand, within BWI76_RS09580 at 2004.116 kb on - strand, within BWI76_RS09580 at 2004.116 kb on - strand, within BWI76_RS09580 at 2004.123 kb on - strand, within BWI76_RS09580 at 2004.198 kb on + strand, within BWI76_RS09580 at 2004.198 kb on + strand, within BWI76_RS09580 at 2004.203 kb on + strand, within BWI76_RS09580 at 2004.206 kb on - strand, within BWI76_RS09580 at 2004.206 kb on - strand, within BWI76_RS09580 at 2004.226 kb on + strand, within BWI76_RS09580 at 2004.231 kb on + strand, within BWI76_RS09580 at 2004.307 kb on - strand, within BWI76_RS09580 at 2004.372 kb on + strand at 2004.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 2,000,916 - BWI76_RS09565 0.15 -0.0 2,000,965 + BWI76_RS09565 0.20 -0.5 2,001,280 + BWI76_RS09565 0.53 +0.3 2,001,288 - BWI76_RS09565 0.54 -0.1 2,001,446 - BWI76_RS09565 0.70 -0.8 2,001,562 + BWI76_RS09565 0.82 +0.1 2,001,966 + BWI76_RS09570 0.13 +0.6 2,002,022 + BWI76_RS09570 0.17 -0.0 2,002,096 - BWI76_RS09570 0.21 -0.1 2,002,134 - BWI76_RS09570 0.23 +0.5 2,002,249 - BWI76_RS09570 0.30 +0.4 2,002,592 + BWI76_RS09570 0.51 +0.6 2,002,643 + BWI76_RS09570 0.54 -0.0 2,002,668 + BWI76_RS09570 0.56 -0.3 2,002,859 + BWI76_RS09570 0.67 +1.2 2,003,335 - -1.0 2,003,350 + -0.2 2,003,373 + -1.0 2,003,799 - BWI76_RS09580 0.28 -0.9 2,003,889 - BWI76_RS09580 0.38 +0.7 2,003,908 + BWI76_RS09580 0.40 -0.6 2,003,908 + BWI76_RS09580 0.40 -0.2 2,003,916 - BWI76_RS09580 0.41 +0.2 2,003,916 - BWI76_RS09580 0.41 +0.1 2,003,926 - BWI76_RS09580 0.42 +0.2 2,003,974 + BWI76_RS09580 0.48 +0.1 2,003,995 + BWI76_RS09580 0.50 -0.6 2,003,995 + BWI76_RS09580 0.50 -1.2 2,004,003 - BWI76_RS09580 0.51 -0.6 2,004,003 - BWI76_RS09580 0.51 -0.4 2,004,108 + BWI76_RS09580 0.62 -0.3 2,004,116 - BWI76_RS09580 0.63 -1.2 2,004,116 - BWI76_RS09580 0.63 -0.6 2,004,123 - BWI76_RS09580 0.64 -0.3 2,004,198 + BWI76_RS09580 0.72 +0.0 2,004,198 + BWI76_RS09580 0.72 -1.6 2,004,203 + BWI76_RS09580 0.73 -0.1 2,004,206 - BWI76_RS09580 0.73 -0.4 2,004,206 - BWI76_RS09580 0.73 -0.1 2,004,226 + BWI76_RS09580 0.76 +0.3 2,004,231 + BWI76_RS09580 0.76 -0.4 2,004,307 - BWI76_RS09580 0.85 +0.3 2,004,372 + -0.9 2,004,391 + -0.2
Or see this region's nucleotide sequence