Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09570

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09565 and BWI76_RS09570 are separated by 11 nucleotidesBWI76_RS09570 and BWI76_RS09575 are separated by 34 nucleotidesBWI76_RS09575 and BWI76_RS09580 overlap by 93 nucleotides BWI76_RS09565: BWI76_RS09565 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 2,000,768 to 2,001,736 _RS09565 BWI76_RS09570: BWI76_RS09570 - hydroxylamine reductase, at 2,001,748 to 2,003,400 _RS09570 BWI76_RS09575: BWI76_RS09575 - hypothetical protein, at 2,003,435 to 2,003,638 _RS09575 BWI76_RS09580: BWI76_RS09580 - surface protein, at 2,003,546 to 2,004,445 _RS09580 Position (kb) 2001 2002 2003 2004Strain fitness (log2 ratio) -1 0 1at 2000.916 kb on - strand, within BWI76_RS09565at 2000.965 kb on + strand, within BWI76_RS09565at 2001.280 kb on + strand, within BWI76_RS09565at 2001.288 kb on - strand, within BWI76_RS09565at 2001.446 kb on - strand, within BWI76_RS09565at 2001.562 kb on + strand, within BWI76_RS09565at 2001.966 kb on + strand, within BWI76_RS09570at 2002.022 kb on + strand, within BWI76_RS09570at 2002.096 kb on - strand, within BWI76_RS09570at 2002.134 kb on - strand, within BWI76_RS09570at 2002.249 kb on - strand, within BWI76_RS09570at 2002.592 kb on + strand, within BWI76_RS09570at 2002.643 kb on + strand, within BWI76_RS09570at 2002.668 kb on + strand, within BWI76_RS09570at 2002.859 kb on + strand, within BWI76_RS09570at 2003.335 kb on - strandat 2003.350 kb on + strandat 2003.373 kb on + strandat 2003.799 kb on - strand, within BWI76_RS09580at 2003.889 kb on - strand, within BWI76_RS09580at 2003.908 kb on + strand, within BWI76_RS09580at 2003.908 kb on + strand, within BWI76_RS09580at 2003.916 kb on - strand, within BWI76_RS09580at 2003.916 kb on - strand, within BWI76_RS09580at 2003.926 kb on - strand, within BWI76_RS09580at 2003.974 kb on + strand, within BWI76_RS09580at 2003.995 kb on + strand, within BWI76_RS09580at 2003.995 kb on + strand, within BWI76_RS09580at 2004.003 kb on - strand, within BWI76_RS09580at 2004.003 kb on - strand, within BWI76_RS09580at 2004.108 kb on + strand, within BWI76_RS09580at 2004.116 kb on - strand, within BWI76_RS09580at 2004.116 kb on - strand, within BWI76_RS09580at 2004.123 kb on - strand, within BWI76_RS09580at 2004.198 kb on + strand, within BWI76_RS09580at 2004.198 kb on + strand, within BWI76_RS09580at 2004.203 kb on + strand, within BWI76_RS09580at 2004.206 kb on - strand, within BWI76_RS09580at 2004.206 kb on - strand, within BWI76_RS09580at 2004.226 kb on + strand, within BWI76_RS09580at 2004.231 kb on + strand, within BWI76_RS09580at 2004.307 kb on - strand, within BWI76_RS09580at 2004.372 kb on + strandat 2004.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,000,916 - BWI76_RS09565 0.15 -0.0
2,000,965 + BWI76_RS09565 0.20 -0.5
2,001,280 + BWI76_RS09565 0.53 +0.3
2,001,288 - BWI76_RS09565 0.54 -0.1
2,001,446 - BWI76_RS09565 0.70 -0.8
2,001,562 + BWI76_RS09565 0.82 +0.1
2,001,966 + BWI76_RS09570 0.13 +0.6
2,002,022 + BWI76_RS09570 0.17 -0.0
2,002,096 - BWI76_RS09570 0.21 -0.1
2,002,134 - BWI76_RS09570 0.23 +0.5
2,002,249 - BWI76_RS09570 0.30 +0.4
2,002,592 + BWI76_RS09570 0.51 +0.6
2,002,643 + BWI76_RS09570 0.54 -0.0
2,002,668 + BWI76_RS09570 0.56 -0.3
2,002,859 + BWI76_RS09570 0.67 +1.2
2,003,335 - -1.0
2,003,350 + -0.2
2,003,373 + -1.0
2,003,799 - BWI76_RS09580 0.28 -0.9
2,003,889 - BWI76_RS09580 0.38 +0.7
2,003,908 + BWI76_RS09580 0.40 -0.6
2,003,908 + BWI76_RS09580 0.40 -0.2
2,003,916 - BWI76_RS09580 0.41 +0.2
2,003,916 - BWI76_RS09580 0.41 +0.1
2,003,926 - BWI76_RS09580 0.42 +0.2
2,003,974 + BWI76_RS09580 0.48 +0.1
2,003,995 + BWI76_RS09580 0.50 -0.6
2,003,995 + BWI76_RS09580 0.50 -1.2
2,004,003 - BWI76_RS09580 0.51 -0.6
2,004,003 - BWI76_RS09580 0.51 -0.4
2,004,108 + BWI76_RS09580 0.62 -0.3
2,004,116 - BWI76_RS09580 0.63 -1.2
2,004,116 - BWI76_RS09580 0.63 -0.6
2,004,123 - BWI76_RS09580 0.64 -0.3
2,004,198 + BWI76_RS09580 0.72 +0.0
2,004,198 + BWI76_RS09580 0.72 -1.6
2,004,203 + BWI76_RS09580 0.73 -0.1
2,004,206 - BWI76_RS09580 0.73 -0.4
2,004,206 - BWI76_RS09580 0.73 -0.1
2,004,226 + BWI76_RS09580 0.76 +0.3
2,004,231 + BWI76_RS09580 0.76 -0.4
2,004,307 - BWI76_RS09580 0.85 +0.3
2,004,372 + -0.9
2,004,391 + -0.2

Or see this region's nucleotide sequence