Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08885

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08875 and BWI76_RS08880 overlap by 4 nucleotidesBWI76_RS08880 and BWI76_RS08885 overlap by 4 nucleotidesBWI76_RS08885 and BWI76_RS08890 are separated by 71 nucleotides BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723 _RS08875 BWI76_RS08880: BWI76_RS08880 - secretion protein HlyD, at 1,869,720 to 1,870,712 _RS08880 BWI76_RS08885: BWI76_RS08885 - transcriptional regulator, at 1,870,709 to 1,871,386 _RS08885 BWI76_RS08890: BWI76_RS08890 - LysR family transcriptional regulator, at 1,871,458 to 1,872,381 _RS08890 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1 2at 1869.901 kb on + strand, within BWI76_RS08880at 1870.125 kb on - strand, within BWI76_RS08880at 1870.211 kb on + strand, within BWI76_RS08880at 1870.218 kb on - strand, within BWI76_RS08880at 1870.349 kb on - strand, within BWI76_RS08880at 1870.413 kb on + strand, within BWI76_RS08880at 1870.610 kb on - strand, within BWI76_RS08880at 1870.685 kb on + strandat 1870.722 kb on - strandat 1870.960 kb on - strand, within BWI76_RS08885at 1870.960 kb on - strand, within BWI76_RS08885at 1871.089 kb on + strand, within BWI76_RS08885at 1871.272 kb on - strand, within BWI76_RS08885at 1871.297 kb on - strand, within BWI76_RS08885at 1871.431 kb on + strandat 1871.431 kb on + strandat 1871.431 kb on + strandat 1871.439 kb on - strandat 1871.439 kb on - strandat 1871.568 kb on - strand, within BWI76_RS08890at 1871.587 kb on + strand, within BWI76_RS08890at 1871.593 kb on - strand, within BWI76_RS08890at 1871.597 kb on + strand, within BWI76_RS08890at 1871.597 kb on + strandat 1871.605 kb on - strand, within BWI76_RS08890at 1871.736 kb on + strand, within BWI76_RS08890at 1871.736 kb on + strand, within BWI76_RS08890at 1871.736 kb on - strand, within BWI76_RS08890at 1871.741 kb on + strand, within BWI76_RS08890at 1871.766 kb on - strand, within BWI76_RS08890at 1871.777 kb on - strand, within BWI76_RS08890at 1871.853 kb on + strand, within BWI76_RS08890at 1871.862 kb on - strand, within BWI76_RS08890at 1871.863 kb on - strand, within BWI76_RS08890at 1871.863 kb on - strand, within BWI76_RS08890at 1871.869 kb on - strand, within BWI76_RS08890at 1871.885 kb on + strand, within BWI76_RS08890at 1871.885 kb on + strand, within BWI76_RS08890at 1871.885 kb on + strand, within BWI76_RS08890at 1871.893 kb on + strand, within BWI76_RS08890at 1871.893 kb on - strand, within BWI76_RS08890at 1871.893 kb on - strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.898 kb on + strand, within BWI76_RS08890at 1871.900 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.906 kb on - strand, within BWI76_RS08890at 1871.908 kb on + strand, within BWI76_RS08890at 1871.908 kb on + strand, within BWI76_RS08890at 1871.908 kb on - strand, within BWI76_RS08890at 1871.910 kb on + strand, within BWI76_RS08890at 1871.910 kb on + strand, within BWI76_RS08890at 1871.910 kb on + strand, within BWI76_RS08890at 1871.910 kb on + strand, within BWI76_RS08890at 1871.916 kb on - strand, within BWI76_RS08890at 1871.916 kb on - strand, within BWI76_RS08890at 1871.916 kb on - strand, within BWI76_RS08890at 1871.916 kb on - strand, within BWI76_RS08890at 1871.916 kb on - strand, within BWI76_RS08890at 1871.918 kb on - strand, within BWI76_RS08890at 1871.918 kb on - strand, within BWI76_RS08890at 1871.918 kb on - strand, within BWI76_RS08890at 1871.918 kb on - strand, within BWI76_RS08890at 1871.961 kb on - strand, within BWI76_RS08890at 1871.963 kb on - strand, within BWI76_RS08890at 1871.967 kb on + strand, within BWI76_RS08890at 1871.967 kb on + strand, within BWI76_RS08890at 1871.967 kb on + strand, within BWI76_RS08890at 1871.967 kb on + strand, within BWI76_RS08890at 1871.975 kb on - strand, within BWI76_RS08890at 1871.985 kb on - strand, within BWI76_RS08890at 1871.987 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1871.999 kb on + strand, within BWI76_RS08890at 1872.004 kb on + strand, within BWI76_RS08890at 1872.007 kb on - strand, within BWI76_RS08890at 1872.007 kb on - strand, within BWI76_RS08890at 1872.007 kb on - strand, within BWI76_RS08890at 1872.007 kb on - strand, within BWI76_RS08890at 1872.009 kb on + strand, within BWI76_RS08890at 1872.045 kb on + strand, within BWI76_RS08890at 1872.045 kb on + strand, within BWI76_RS08890at 1872.045 kb on + strand, within BWI76_RS08890at 1872.046 kb on + strand, within BWI76_RS08890at 1872.053 kb on - strand, within BWI76_RS08890at 1872.053 kb on - strand, within BWI76_RS08890at 1872.079 kb on + strand, within BWI76_RS08890at 1872.088 kb on - strand, within BWI76_RS08890at 1872.100 kb on - strand, within BWI76_RS08890at 1872.172 kb on + strand, within BWI76_RS08890at 1872.180 kb on - strand, within BWI76_RS08890at 1872.180 kb on - strand, within BWI76_RS08890at 1872.191 kb on - strand, within BWI76_RS08890at 1872.223 kb on - strand, within BWI76_RS08890at 1872.225 kb on + strandat 1872.225 kb on + strand, within BWI76_RS08890at 1872.225 kb on + strand, within BWI76_RS08890at 1872.225 kb on + strand, within BWI76_RS08890at 1872.225 kb on + strandat 1872.225 kb on + strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.233 kb on - strand, within BWI76_RS08890at 1872.248 kb on - strand, within BWI76_RS08890at 1872.263 kb on + strand, within BWI76_RS08890at 1872.279 kb on + strandat 1872.296 kb on - strandat 1872.302 kb on + strandat 1872.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,869,901 + BWI76_RS08880 0.18 -0.3
1,870,125 - BWI76_RS08880 0.41 -0.3
1,870,211 + BWI76_RS08880 0.49 -0.1
1,870,218 - BWI76_RS08880 0.50 -0.3
1,870,349 - BWI76_RS08880 0.63 -0.4
1,870,413 + BWI76_RS08880 0.70 -0.1
1,870,610 - BWI76_RS08880 0.90 +0.2
1,870,685 + -1.0
1,870,722 - -1.2
1,870,960 - BWI76_RS08885 0.37 -0.7
1,870,960 - BWI76_RS08885 0.37 -1.2
1,871,089 + BWI76_RS08885 0.56 -1.2
1,871,272 - BWI76_RS08885 0.83 -0.9
1,871,297 - BWI76_RS08885 0.87 -0.1
1,871,431 + -0.5
1,871,431 + +0.2
1,871,431 + +0.8
1,871,439 - -0.1
1,871,439 - +0.3
1,871,568 - BWI76_RS08890 0.12 +1.3
1,871,587 + BWI76_RS08890 0.14 -0.7
1,871,593 - BWI76_RS08890 0.15 +1.1
1,871,597 + BWI76_RS08890 0.15 -1.4
1,871,597 + -0.1
1,871,605 - BWI76_RS08890 0.16 -0.3
1,871,736 + BWI76_RS08890 0.30 +1.0
1,871,736 + BWI76_RS08890 0.30 -0.0
1,871,736 - BWI76_RS08890 0.30 -0.1
1,871,741 + BWI76_RS08890 0.31 -0.1
1,871,766 - BWI76_RS08890 0.33 -0.7
1,871,777 - BWI76_RS08890 0.35 +1.2
1,871,853 + BWI76_RS08890 0.43 -0.0
1,871,862 - BWI76_RS08890 0.44 -1.1
1,871,863 - BWI76_RS08890 0.44 -0.4
1,871,863 - BWI76_RS08890 0.44 -0.5
1,871,869 - BWI76_RS08890 0.44 -0.4
1,871,885 + BWI76_RS08890 0.46 -0.4
1,871,885 + BWI76_RS08890 0.46 +0.1
1,871,885 + BWI76_RS08890 0.46 -0.4
1,871,893 + BWI76_RS08890 0.47 -1.5
1,871,893 - BWI76_RS08890 0.47 +0.0
1,871,893 - BWI76_RS08890 0.47 -0.1
1,871,898 + BWI76_RS08890 0.48 +0.2
1,871,898 + BWI76_RS08890 0.48 -1.4
1,871,898 + BWI76_RS08890 0.48 -0.0
1,871,898 + BWI76_RS08890 0.48 -0.0
1,871,898 + BWI76_RS08890 0.48 +1.1
1,871,898 + BWI76_RS08890 0.48 -0.6
1,871,898 + BWI76_RS08890 0.48 +0.4
1,871,898 + BWI76_RS08890 0.48 -0.0
1,871,898 + BWI76_RS08890 0.48 -0.4
1,871,898 + BWI76_RS08890 0.48 +0.2
1,871,900 - BWI76_RS08890 0.48 +0.0
1,871,906 - BWI76_RS08890 0.48 -0.3
1,871,906 - BWI76_RS08890 0.48 +0.8
1,871,906 - BWI76_RS08890 0.48 -0.2
1,871,906 - BWI76_RS08890 0.48 +0.3
1,871,906 - BWI76_RS08890 0.48 +0.2
1,871,906 - BWI76_RS08890 0.48 -0.6
1,871,906 - BWI76_RS08890 0.48 -0.5
1,871,906 - BWI76_RS08890 0.48 -0.6
1,871,906 - BWI76_RS08890 0.48 -1.4
1,871,906 - BWI76_RS08890 0.48 +0.9
1,871,906 - BWI76_RS08890 0.48 +0.5
1,871,906 - BWI76_RS08890 0.48 -0.4
1,871,908 + BWI76_RS08890 0.49 -0.3
1,871,908 + BWI76_RS08890 0.49 -0.5
1,871,908 - BWI76_RS08890 0.49 -0.7
1,871,910 + BWI76_RS08890 0.49 -1.0
1,871,910 + BWI76_RS08890 0.49 +0.1
1,871,910 + BWI76_RS08890 0.49 -0.7
1,871,910 + BWI76_RS08890 0.49 -0.4
1,871,916 - BWI76_RS08890 0.50 +1.0
1,871,916 - BWI76_RS08890 0.50 +0.1
1,871,916 - BWI76_RS08890 0.50 -0.2
1,871,916 - BWI76_RS08890 0.50 -0.1
1,871,916 - BWI76_RS08890 0.50 -0.4
1,871,918 - BWI76_RS08890 0.50 -0.1
1,871,918 - BWI76_RS08890 0.50 +0.3
1,871,918 - BWI76_RS08890 0.50 -0.0
1,871,918 - BWI76_RS08890 0.50 -0.9
1,871,961 - BWI76_RS08890 0.54 +0.5
1,871,963 - BWI76_RS08890 0.55 +0.5
1,871,967 + BWI76_RS08890 0.55 -1.0
1,871,967 + BWI76_RS08890 0.55 +0.7
1,871,967 + BWI76_RS08890 0.55 +0.4
1,871,967 + BWI76_RS08890 0.55 +0.6
1,871,975 - BWI76_RS08890 0.56 -1.3
1,871,985 - BWI76_RS08890 0.57 +1.3
1,871,987 + BWI76_RS08890 0.57 +0.3
1,871,999 + BWI76_RS08890 0.59 +0.0
1,871,999 + BWI76_RS08890 0.59 -0.6
1,871,999 + BWI76_RS08890 0.59 -0.4
1,871,999 + BWI76_RS08890 0.59 -1.2
1,871,999 + BWI76_RS08890 0.59 -0.5
1,871,999 + BWI76_RS08890 0.59 -0.2
1,872,004 + BWI76_RS08890 0.59 -1.0
1,872,007 - BWI76_RS08890 0.59 -0.2
1,872,007 - BWI76_RS08890 0.59 -0.8
1,872,007 - BWI76_RS08890 0.59 -1.5
1,872,007 - BWI76_RS08890 0.59 +0.4
1,872,009 + BWI76_RS08890 0.60 +0.1
1,872,045 + BWI76_RS08890 0.64 +0.2
1,872,045 + BWI76_RS08890 0.64 +0.6
1,872,045 + BWI76_RS08890 0.64 -0.7
1,872,046 + BWI76_RS08890 0.64 -0.1
1,872,053 - BWI76_RS08890 0.64 -0.6
1,872,053 - BWI76_RS08890 0.64 +0.9
1,872,079 + BWI76_RS08890 0.67 -1.2
1,872,088 - BWI76_RS08890 0.68 +0.3
1,872,100 - BWI76_RS08890 0.69 +0.2
1,872,172 + BWI76_RS08890 0.77 +0.5
1,872,180 - BWI76_RS08890 0.78 +1.0
1,872,180 - BWI76_RS08890 0.78 -0.4
1,872,191 - BWI76_RS08890 0.79 -2.1
1,872,223 - BWI76_RS08890 0.83 +1.1
1,872,225 + -0.4
1,872,225 + BWI76_RS08890 0.83 -0.0
1,872,225 + BWI76_RS08890 0.83 -0.2
1,872,225 + BWI76_RS08890 0.83 +0.2
1,872,225 + +0.3
1,872,225 + BWI76_RS08890 0.83 -0.1
1,872,233 - BWI76_RS08890 0.84 +1.4
1,872,233 - BWI76_RS08890 0.84 +1.6
1,872,233 - BWI76_RS08890 0.84 -1.0
1,872,233 - BWI76_RS08890 0.84 +1.3
1,872,233 - BWI76_RS08890 0.84 +0.4
1,872,233 - BWI76_RS08890 0.84 +0.7
1,872,233 - BWI76_RS08890 0.84 -0.0
1,872,233 - BWI76_RS08890 0.84 +0.6
1,872,233 - BWI76_RS08890 0.84 +0.4
1,872,233 - BWI76_RS08890 0.84 +0.8
1,872,248 - BWI76_RS08890 0.85 +0.4
1,872,263 + BWI76_RS08890 0.87 +0.6
1,872,279 + +0.1
1,872,296 - +0.0
1,872,302 + +2.4
1,872,306 - -1.8

Or see this region's nucleotide sequence