Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08875 and BWI76_RS08880 overlap by 4 nucleotides BWI76_RS08880 and BWI76_RS08885 overlap by 4 nucleotides BWI76_RS08885 and BWI76_RS08890 are separated by 71 nucleotides
BWI76_RS08875: BWI76_RS08875 - multidrug ABC transporter ATP-binding protein, at 1,867,984 to 1,869,723
_RS08875
BWI76_RS08880: BWI76_RS08880 - secretion protein HlyD, at 1,869,720 to 1,870,712
_RS08880
BWI76_RS08885: BWI76_RS08885 - transcriptional regulator, at 1,870,709 to 1,871,386
_RS08885
BWI76_RS08890: BWI76_RS08890 - LysR family transcriptional regulator, at 1,871,458 to 1,872,381
_RS08890
Position (kb)
1870
1871
1872 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1869.901 kb on + strand, within BWI76_RS08880 at 1870.125 kb on - strand, within BWI76_RS08880 at 1870.211 kb on + strand, within BWI76_RS08880 at 1870.218 kb on - strand, within BWI76_RS08880 at 1870.349 kb on - strand, within BWI76_RS08880 at 1870.413 kb on + strand, within BWI76_RS08880 at 1870.610 kb on - strand, within BWI76_RS08880 at 1870.685 kb on + strand at 1870.722 kb on - strand at 1870.960 kb on - strand, within BWI76_RS08885 at 1870.960 kb on - strand, within BWI76_RS08885 at 1871.089 kb on + strand, within BWI76_RS08885 at 1871.272 kb on - strand, within BWI76_RS08885 at 1871.297 kb on - strand, within BWI76_RS08885 at 1871.431 kb on + strand at 1871.431 kb on + strand at 1871.431 kb on + strand at 1871.439 kb on - strand at 1871.439 kb on - strand at 1871.568 kb on - strand, within BWI76_RS08890 at 1871.587 kb on + strand, within BWI76_RS08890 at 1871.593 kb on - strand, within BWI76_RS08890 at 1871.597 kb on + strand, within BWI76_RS08890 at 1871.597 kb on + strand at 1871.605 kb on - strand, within BWI76_RS08890 at 1871.736 kb on + strand, within BWI76_RS08890 at 1871.736 kb on + strand, within BWI76_RS08890 at 1871.736 kb on - strand, within BWI76_RS08890 at 1871.741 kb on + strand, within BWI76_RS08890 at 1871.766 kb on - strand, within BWI76_RS08890 at 1871.777 kb on - strand, within BWI76_RS08890 at 1871.853 kb on + strand, within BWI76_RS08890 at 1871.862 kb on - strand, within BWI76_RS08890 at 1871.863 kb on - strand, within BWI76_RS08890 at 1871.863 kb on - strand, within BWI76_RS08890 at 1871.869 kb on - strand, within BWI76_RS08890 at 1871.885 kb on + strand, within BWI76_RS08890 at 1871.885 kb on + strand, within BWI76_RS08890 at 1871.885 kb on + strand, within BWI76_RS08890 at 1871.893 kb on + strand, within BWI76_RS08890 at 1871.893 kb on - strand, within BWI76_RS08890 at 1871.893 kb on - strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.898 kb on + strand, within BWI76_RS08890 at 1871.900 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.906 kb on - strand, within BWI76_RS08890 at 1871.908 kb on + strand, within BWI76_RS08890 at 1871.908 kb on + strand, within BWI76_RS08890 at 1871.908 kb on - strand, within BWI76_RS08890 at 1871.910 kb on + strand, within BWI76_RS08890 at 1871.910 kb on + strand, within BWI76_RS08890 at 1871.910 kb on + strand, within BWI76_RS08890 at 1871.910 kb on + strand, within BWI76_RS08890 at 1871.916 kb on - strand, within BWI76_RS08890 at 1871.916 kb on - strand, within BWI76_RS08890 at 1871.916 kb on - strand, within BWI76_RS08890 at 1871.916 kb on - strand, within BWI76_RS08890 at 1871.916 kb on - strand, within BWI76_RS08890 at 1871.918 kb on - strand, within BWI76_RS08890 at 1871.918 kb on - strand, within BWI76_RS08890 at 1871.918 kb on - strand, within BWI76_RS08890 at 1871.918 kb on - strand, within BWI76_RS08890 at 1871.961 kb on - strand, within BWI76_RS08890 at 1871.963 kb on - strand, within BWI76_RS08890 at 1871.967 kb on + strand, within BWI76_RS08890 at 1871.967 kb on + strand, within BWI76_RS08890 at 1871.967 kb on + strand, within BWI76_RS08890 at 1871.967 kb on + strand, within BWI76_RS08890 at 1871.975 kb on - strand, within BWI76_RS08890 at 1871.985 kb on - strand, within BWI76_RS08890 at 1871.987 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1871.999 kb on + strand, within BWI76_RS08890 at 1872.004 kb on + strand, within BWI76_RS08890 at 1872.007 kb on - strand, within BWI76_RS08890 at 1872.007 kb on - strand, within BWI76_RS08890 at 1872.007 kb on - strand, within BWI76_RS08890 at 1872.007 kb on - strand, within BWI76_RS08890 at 1872.009 kb on + strand, within BWI76_RS08890 at 1872.045 kb on + strand, within BWI76_RS08890 at 1872.045 kb on + strand, within BWI76_RS08890 at 1872.045 kb on + strand, within BWI76_RS08890 at 1872.046 kb on + strand, within BWI76_RS08890 at 1872.053 kb on - strand, within BWI76_RS08890 at 1872.053 kb on - strand, within BWI76_RS08890 at 1872.079 kb on + strand, within BWI76_RS08890 at 1872.088 kb on - strand, within BWI76_RS08890 at 1872.100 kb on - strand, within BWI76_RS08890 at 1872.172 kb on + strand, within BWI76_RS08890 at 1872.180 kb on - strand, within BWI76_RS08890 at 1872.180 kb on - strand, within BWI76_RS08890 at 1872.191 kb on - strand, within BWI76_RS08890 at 1872.223 kb on - strand, within BWI76_RS08890 at 1872.225 kb on + strand at 1872.225 kb on + strand, within BWI76_RS08890 at 1872.225 kb on + strand, within BWI76_RS08890 at 1872.225 kb on + strand, within BWI76_RS08890 at 1872.225 kb on + strand at 1872.225 kb on + strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.233 kb on - strand, within BWI76_RS08890 at 1872.248 kb on - strand, within BWI76_RS08890 at 1872.263 kb on + strand, within BWI76_RS08890 at 1872.279 kb on + strand at 1872.296 kb on - strand at 1872.302 kb on + strand at 1872.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 1,869,901 + BWI76_RS08880 0.18 -0.3 1,870,125 - BWI76_RS08880 0.41 -0.3 1,870,211 + BWI76_RS08880 0.49 -0.1 1,870,218 - BWI76_RS08880 0.50 -0.3 1,870,349 - BWI76_RS08880 0.63 -0.4 1,870,413 + BWI76_RS08880 0.70 -0.1 1,870,610 - BWI76_RS08880 0.90 +0.2 1,870,685 + -1.0 1,870,722 - -1.2 1,870,960 - BWI76_RS08885 0.37 -0.7 1,870,960 - BWI76_RS08885 0.37 -1.2 1,871,089 + BWI76_RS08885 0.56 -1.2 1,871,272 - BWI76_RS08885 0.83 -0.9 1,871,297 - BWI76_RS08885 0.87 -0.1 1,871,431 + -0.5 1,871,431 + +0.2 1,871,431 + +0.8 1,871,439 - -0.1 1,871,439 - +0.3 1,871,568 - BWI76_RS08890 0.12 +1.3 1,871,587 + BWI76_RS08890 0.14 -0.7 1,871,593 - BWI76_RS08890 0.15 +1.1 1,871,597 + BWI76_RS08890 0.15 -1.4 1,871,597 + -0.1 1,871,605 - BWI76_RS08890 0.16 -0.3 1,871,736 + BWI76_RS08890 0.30 +1.0 1,871,736 + BWI76_RS08890 0.30 -0.0 1,871,736 - BWI76_RS08890 0.30 -0.1 1,871,741 + BWI76_RS08890 0.31 -0.1 1,871,766 - BWI76_RS08890 0.33 -0.7 1,871,777 - BWI76_RS08890 0.35 +1.2 1,871,853 + BWI76_RS08890 0.43 -0.0 1,871,862 - BWI76_RS08890 0.44 -1.1 1,871,863 - BWI76_RS08890 0.44 -0.4 1,871,863 - BWI76_RS08890 0.44 -0.5 1,871,869 - BWI76_RS08890 0.44 -0.4 1,871,885 + BWI76_RS08890 0.46 -0.4 1,871,885 + BWI76_RS08890 0.46 +0.1 1,871,885 + BWI76_RS08890 0.46 -0.4 1,871,893 + BWI76_RS08890 0.47 -1.5 1,871,893 - BWI76_RS08890 0.47 +0.0 1,871,893 - BWI76_RS08890 0.47 -0.1 1,871,898 + BWI76_RS08890 0.48 +0.2 1,871,898 + BWI76_RS08890 0.48 -1.4 1,871,898 + BWI76_RS08890 0.48 -0.0 1,871,898 + BWI76_RS08890 0.48 -0.0 1,871,898 + BWI76_RS08890 0.48 +1.1 1,871,898 + BWI76_RS08890 0.48 -0.6 1,871,898 + BWI76_RS08890 0.48 +0.4 1,871,898 + BWI76_RS08890 0.48 -0.0 1,871,898 + BWI76_RS08890 0.48 -0.4 1,871,898 + BWI76_RS08890 0.48 +0.2 1,871,900 - BWI76_RS08890 0.48 +0.0 1,871,906 - BWI76_RS08890 0.48 -0.3 1,871,906 - BWI76_RS08890 0.48 +0.8 1,871,906 - BWI76_RS08890 0.48 -0.2 1,871,906 - BWI76_RS08890 0.48 +0.3 1,871,906 - BWI76_RS08890 0.48 +0.2 1,871,906 - BWI76_RS08890 0.48 -0.6 1,871,906 - BWI76_RS08890 0.48 -0.5 1,871,906 - BWI76_RS08890 0.48 -0.6 1,871,906 - BWI76_RS08890 0.48 -1.4 1,871,906 - BWI76_RS08890 0.48 +0.9 1,871,906 - BWI76_RS08890 0.48 +0.5 1,871,906 - BWI76_RS08890 0.48 -0.4 1,871,908 + BWI76_RS08890 0.49 -0.3 1,871,908 + BWI76_RS08890 0.49 -0.5 1,871,908 - BWI76_RS08890 0.49 -0.7 1,871,910 + BWI76_RS08890 0.49 -1.0 1,871,910 + BWI76_RS08890 0.49 +0.1 1,871,910 + BWI76_RS08890 0.49 -0.7 1,871,910 + BWI76_RS08890 0.49 -0.4 1,871,916 - BWI76_RS08890 0.50 +1.0 1,871,916 - BWI76_RS08890 0.50 +0.1 1,871,916 - BWI76_RS08890 0.50 -0.2 1,871,916 - BWI76_RS08890 0.50 -0.1 1,871,916 - BWI76_RS08890 0.50 -0.4 1,871,918 - BWI76_RS08890 0.50 -0.1 1,871,918 - BWI76_RS08890 0.50 +0.3 1,871,918 - BWI76_RS08890 0.50 -0.0 1,871,918 - BWI76_RS08890 0.50 -0.9 1,871,961 - BWI76_RS08890 0.54 +0.5 1,871,963 - BWI76_RS08890 0.55 +0.5 1,871,967 + BWI76_RS08890 0.55 -1.0 1,871,967 + BWI76_RS08890 0.55 +0.7 1,871,967 + BWI76_RS08890 0.55 +0.4 1,871,967 + BWI76_RS08890 0.55 +0.6 1,871,975 - BWI76_RS08890 0.56 -1.3 1,871,985 - BWI76_RS08890 0.57 +1.3 1,871,987 + BWI76_RS08890 0.57 +0.3 1,871,999 + BWI76_RS08890 0.59 +0.0 1,871,999 + BWI76_RS08890 0.59 -0.6 1,871,999 + BWI76_RS08890 0.59 -0.4 1,871,999 + BWI76_RS08890 0.59 -1.2 1,871,999 + BWI76_RS08890 0.59 -0.5 1,871,999 + BWI76_RS08890 0.59 -0.2 1,872,004 + BWI76_RS08890 0.59 -1.0 1,872,007 - BWI76_RS08890 0.59 -0.2 1,872,007 - BWI76_RS08890 0.59 -0.8 1,872,007 - BWI76_RS08890 0.59 -1.5 1,872,007 - BWI76_RS08890 0.59 +0.4 1,872,009 + BWI76_RS08890 0.60 +0.1 1,872,045 + BWI76_RS08890 0.64 +0.2 1,872,045 + BWI76_RS08890 0.64 +0.6 1,872,045 + BWI76_RS08890 0.64 -0.7 1,872,046 + BWI76_RS08890 0.64 -0.1 1,872,053 - BWI76_RS08890 0.64 -0.6 1,872,053 - BWI76_RS08890 0.64 +0.9 1,872,079 + BWI76_RS08890 0.67 -1.2 1,872,088 - BWI76_RS08890 0.68 +0.3 1,872,100 - BWI76_RS08890 0.69 +0.2 1,872,172 + BWI76_RS08890 0.77 +0.5 1,872,180 - BWI76_RS08890 0.78 +1.0 1,872,180 - BWI76_RS08890 0.78 -0.4 1,872,191 - BWI76_RS08890 0.79 -2.1 1,872,223 - BWI76_RS08890 0.83 +1.1 1,872,225 + -0.4 1,872,225 + BWI76_RS08890 0.83 -0.0 1,872,225 + BWI76_RS08890 0.83 -0.2 1,872,225 + BWI76_RS08890 0.83 +0.2 1,872,225 + +0.3 1,872,225 + BWI76_RS08890 0.83 -0.1 1,872,233 - BWI76_RS08890 0.84 +1.4 1,872,233 - BWI76_RS08890 0.84 +1.6 1,872,233 - BWI76_RS08890 0.84 -1.0 1,872,233 - BWI76_RS08890 0.84 +1.3 1,872,233 - BWI76_RS08890 0.84 +0.4 1,872,233 - BWI76_RS08890 0.84 +0.7 1,872,233 - BWI76_RS08890 0.84 -0.0 1,872,233 - BWI76_RS08890 0.84 +0.6 1,872,233 - BWI76_RS08890 0.84 +0.4 1,872,233 - BWI76_RS08890 0.84 +0.8 1,872,248 - BWI76_RS08890 0.85 +0.4 1,872,263 + BWI76_RS08890 0.87 +0.6 1,872,279 + +0.1 1,872,296 - +0.0 1,872,302 + +2.4 1,872,306 - -1.8
Or see this region's nucleotide sequence