Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06930

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06920 and BWI76_RS06925 are separated by 136 nucleotidesBWI76_RS06925 and BWI76_RS06930 overlap by 14 nucleotidesBWI76_RS06930 and BWI76_RS06935 are separated by 96 nucleotides BWI76_RS06920: BWI76_RS06920 - paraslipin, at 1,454,041 to 1,454,958 _RS06920 BWI76_RS06925: BWI76_RS06925 - iron ABC transporter ATP-binding protein FetA, at 1,455,095 to 1,455,775 _RS06925 BWI76_RS06930: BWI76_RS06930 - iron export ABC transporter permease subunit FetB, at 1,455,762 to 1,456,544 _RS06930 BWI76_RS06935: BWI76_RS06935 - co-chaperone YbbN, at 1,456,641 to 1,457,495 _RS06935 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -2 -1 0 1 2at 1454.821 kb on + strand, within BWI76_RS06920at 1454.868 kb on - strandat 1454.868 kb on - strandat 1455.003 kb on - strandat 1455.008 kb on + strandat 1455.008 kb on + strandat 1455.063 kb on + strandat 1455.069 kb on - strandat 1455.152 kb on - strandat 1455.159 kb on + strandat 1455.159 kb on + strandat 1455.159 kb on + strandat 1455.159 kb on + strandat 1455.167 kb on - strand, within BWI76_RS06925at 1455.167 kb on - strand, within BWI76_RS06925at 1455.181 kb on + strand, within BWI76_RS06925at 1455.189 kb on - strand, within BWI76_RS06925at 1455.189 kb on - strand, within BWI76_RS06925at 1455.189 kb on - strand, within BWI76_RS06925at 1455.203 kb on - strand, within BWI76_RS06925at 1455.215 kb on - strand, within BWI76_RS06925at 1455.341 kb on + strand, within BWI76_RS06925at 1455.341 kb on + strand, within BWI76_RS06925at 1455.349 kb on - strand, within BWI76_RS06925at 1455.368 kb on - strand, within BWI76_RS06925at 1455.368 kb on - strand, within BWI76_RS06925at 1455.375 kb on + strand, within BWI76_RS06925at 1455.383 kb on + strand, within BWI76_RS06925at 1455.383 kb on + strand, within BWI76_RS06925at 1455.383 kb on + strandat 1455.391 kb on - strand, within BWI76_RS06925at 1455.391 kb on - strand, within BWI76_RS06925at 1455.470 kb on - strand, within BWI76_RS06925at 1455.516 kb on - strand, within BWI76_RS06925at 1455.670 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.677 kb on + strand, within BWI76_RS06925at 1455.685 kb on - strand, within BWI76_RS06925at 1455.685 kb on - strand, within BWI76_RS06925at 1455.715 kb on - strandat 1455.789 kb on + strandat 1455.907 kb on - strand, within BWI76_RS06930at 1455.982 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.071 kb on + strand, within BWI76_RS06930at 1456.079 kb on - strand, within BWI76_RS06930at 1456.085 kb on - strandat 1456.247 kb on + strand, within BWI76_RS06930at 1456.444 kb on - strand, within BWI76_RS06930at 1456.518 kb on - strandat 1456.760 kb on - strand, within BWI76_RS06935at 1456.840 kb on - strand, within BWI76_RS06935at 1457.010 kb on + strand, within BWI76_RS06935at 1457.018 kb on - strandat 1457.088 kb on - strand, within BWI76_RS06935at 1457.212 kb on - strand, within BWI76_RS06935at 1457.358 kb on + strand, within BWI76_RS06935at 1457.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,454,821 + BWI76_RS06920 0.85 -0.4
1,454,868 - +0.2
1,454,868 - -1.0
1,455,003 - -0.5
1,455,008 + +0.1
1,455,008 + -0.6
1,455,063 + -0.3
1,455,069 - +1.7
1,455,152 - +1.0
1,455,159 + +1.4
1,455,159 + +0.8
1,455,159 + +0.8
1,455,159 + +1.1
1,455,167 - BWI76_RS06925 0.11 +1.7
1,455,167 - BWI76_RS06925 0.11 +1.3
1,455,181 + BWI76_RS06925 0.13 +1.1
1,455,189 - BWI76_RS06925 0.14 +1.5
1,455,189 - BWI76_RS06925 0.14 +1.5
1,455,189 - BWI76_RS06925 0.14 +0.4
1,455,203 - BWI76_RS06925 0.16 +1.6
1,455,215 - BWI76_RS06925 0.18 +1.9
1,455,341 + BWI76_RS06925 0.36 +1.1
1,455,341 + BWI76_RS06925 0.36 +1.5
1,455,349 - BWI76_RS06925 0.37 +1.5
1,455,368 - BWI76_RS06925 0.40 +2.4
1,455,368 - BWI76_RS06925 0.40 +1.4
1,455,375 + BWI76_RS06925 0.41 +1.7
1,455,383 + BWI76_RS06925 0.42 +1.3
1,455,383 + BWI76_RS06925 0.42 +1.1
1,455,383 + +1.5
1,455,391 - BWI76_RS06925 0.43 +1.1
1,455,391 - BWI76_RS06925 0.43 -0.0
1,455,470 - BWI76_RS06925 0.55 +1.6
1,455,516 - BWI76_RS06925 0.62 +1.4
1,455,670 + BWI76_RS06925 0.84 +0.9
1,455,677 + BWI76_RS06925 0.85 +1.6
1,455,677 + BWI76_RS06925 0.85 +1.3
1,455,677 + BWI76_RS06925 0.85 +1.3
1,455,685 - BWI76_RS06925 0.87 +0.9
1,455,685 - BWI76_RS06925 0.87 +1.4
1,455,715 - +1.7
1,455,789 + +2.3
1,455,907 - BWI76_RS06930 0.19 +0.5
1,455,982 + BWI76_RS06930 0.28 +1.5
1,456,071 + BWI76_RS06930 0.39 +1.5
1,456,071 + BWI76_RS06930 0.39 +1.3
1,456,071 + BWI76_RS06930 0.39 +1.2
1,456,079 - BWI76_RS06930 0.40 +1.5
1,456,085 - -1.4
1,456,247 + BWI76_RS06930 0.62 +2.4
1,456,444 - BWI76_RS06930 0.87 +1.0
1,456,518 - +1.6
1,456,760 - BWI76_RS06935 0.14 +0.3
1,456,840 - BWI76_RS06935 0.23 -0.0
1,457,010 + BWI76_RS06935 0.43 -0.5
1,457,018 - +0.5
1,457,088 - BWI76_RS06935 0.52 -0.5
1,457,212 - BWI76_RS06935 0.67 -0.4
1,457,358 + BWI76_RS06935 0.84 -2.5
1,457,451 + +0.0

Or see this region's nucleotide sequence