Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0133 and SO_A0134 are separated by 63 nucleotides SO_A0134 and SO_A0135 are separated by 140 nucleotides SO_A0135 and SO_A0136 overlap by 1394 nucleotides SO_A0136 and SO_A0137 are separated by 342 nucleotides SO_A0137 and SO_A0138 are separated by 140 nucleotides
SO_A0133: SO_A0133 - no description, at 117,258 to 118,199
_A0133
SO_A0134: SO_A0134 - no description, at 118,263 to 118,715
_A0134
SO_A0135: SO_A0135 - no description, at 118,856 to 121,991
_A0135
SO_A0136: SO_A0136 - ISSod3, transposase (NCBI), at 120,598 to 121,812
_A0136
SO_A0137: SO_A0137 - no description, at 122,155 to 122,331
_A0137
SO_A0138: SO_A0138 - no description, at 122,472 to 124,957
_A0138
Position (kb) 118
119
120
121
122 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 117.878 kb on - strand, within SO_A0133 at 117.910 kb on + strand, within SO_A0133 at 117.910 kb on + strand, within SO_A0133 at 117.910 kb on + strand, within SO_A0133 at 117.910 kb on + strand, within SO_A0133 at 117.918 kb on - strand, within SO_A0133 at 117.945 kb on + strand, within SO_A0133 at 117.953 kb on + strand, within SO_A0133 at 117.961 kb on - strand, within SO_A0133 at 117.961 kb on - strand, within SO_A0133 at 117.966 kb on - strand, within SO_A0133 at 117.977 kb on + strand, within SO_A0133 at 117.985 kb on - strand, within SO_A0133 at 117.985 kb on - strand, within SO_A0133 at 118.034 kb on + strand, within SO_A0133 at 118.063 kb on - strand, within SO_A0133 at 118.093 kb on + strand, within SO_A0133 at 118.103 kb on + strand, within SO_A0133 at 118.120 kb on + strand at 118.141 kb on - strand at 118.158 kb on + strand at 118.168 kb on + strand at 118.176 kb on - strand at 118.233 kb on - strand at 118.238 kb on + strand at 118.246 kb on + strand at 118.246 kb on - strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.362 kb on + strand, within SO_A0134 at 118.374 kb on + strand, within SO_A0134 at 118.416 kb on + strand, within SO_A0134 at 118.416 kb on + strand, within SO_A0134 at 118.416 kb on + strand, within SO_A0134 at 118.418 kb on + strand, within SO_A0134 at 118.424 kb on - strand, within SO_A0134 at 118.424 kb on - strand, within SO_A0134 at 118.424 kb on - strand, within SO_A0134 at 118.424 kb on - strand, within SO_A0134 at 118.424 kb on - strand, within SO_A0134 at 118.428 kb on + strand, within SO_A0134 at 118.452 kb on + strand, within SO_A0134 at 118.460 kb on - strand, within SO_A0134 at 118.460 kb on - strand, within SO_A0134 at 118.460 kb on - strand, within SO_A0134 at 118.460 kb on - strand, within SO_A0134 at 118.476 kb on - strand, within SO_A0134 at 118.532 kb on + strand, within SO_A0134 at 118.554 kb on + strand, within SO_A0134 at 118.562 kb on + strand, within SO_A0134 at 118.562 kb on - strand, within SO_A0134 at 118.562 kb on - strand, within SO_A0134 at 118.567 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.580 kb on + strand, within SO_A0134 at 118.581 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.588 kb on - strand, within SO_A0134 at 118.623 kb on + strand, within SO_A0134 at 118.623 kb on + strand, within SO_A0134 at 118.645 kb on + strand, within SO_A0134 at 118.659 kb on - strand, within SO_A0134 at 118.678 kb on + strand at 118.695 kb on + strand at 118.695 kb on + strand at 118.695 kb on + strand at 118.695 kb on + strand at 118.696 kb on - strand at 118.702 kb on + strand at 118.716 kb on + strand at 118.717 kb on - strand at 118.724 kb on - strand at 118.736 kb on + strand at 118.745 kb on + strand at 118.753 kb on - strand at 118.757 kb on + strand at 118.757 kb on + strand at 118.767 kb on + strand at 118.767 kb on + strand at 118.767 kb on + strand at 118.767 kb on + strand at 118.767 kb on + strand at 118.767 kb on + strand at 118.775 kb on - strand at 118.775 kb on - strand at 118.789 kb on + strand at 118.798 kb on + strand at 118.804 kb on + strand at 118.806 kb on - strand at 118.812 kb on - strand at 118.812 kb on - strand at 118.821 kb on + strand at 118.841 kb on + strand at 118.846 kb on - strand at 118.860 kb on - strand at 118.883 kb on + strand at 118.899 kb on + strand at 118.899 kb on + strand at 118.907 kb on - strand at 118.907 kb on - strand at 118.907 kb on - strand at 118.907 kb on - strand at 118.933 kb on + strand at 118.960 kb on - strand at 119.011 kb on - strand at 119.018 kb on + strand at 119.026 kb on - strand at 119.031 kb on - strand at 119.034 kb on - strand at 119.167 kb on + strand at 119.175 kb on - strand, within SO_A0135 at 119.200 kb on - strand, within SO_A0135 at 119.209 kb on - strand, within SO_A0135 at 119.242 kb on + strand, within SO_A0135 at 119.245 kb on + strand, within SO_A0135 at 119.245 kb on + strand, within SO_A0135 at 119.245 kb on + strand, within SO_A0135 at 119.305 kb on - strand, within SO_A0135 at 119.307 kb on + strand, within SO_A0135 at 119.307 kb on + strand, within SO_A0135 at 119.315 kb on - strand, within SO_A0135 at 119.315 kb on - strand, within SO_A0135 at 119.315 kb on - strand, within SO_A0135 at 119.315 kb on - strand, within SO_A0135 at 120.158 kb on + strand, within SO_A0135 at 120.183 kb on + strand, within SO_A0135 at 120.199 kb on - strand, within SO_A0135 at 120.218 kb on - strand, within SO_A0135 at 120.270 kb on - strand, within SO_A0135 at 120.312 kb on + strand, within SO_A0135 at 120.312 kb on + strand, within SO_A0135 at 120.320 kb on - strand, within SO_A0135 at 120.320 kb on - strand, within SO_A0135 at 120.324 kb on + strand, within SO_A0135 at 120.332 kb on - strand, within SO_A0135 at 120.339 kb on - strand, within SO_A0135 at 120.377 kb on - strand, within SO_A0135 at 120.403 kb on + strand, within SO_A0135 at 120.411 kb on - strand, within SO_A0135 at 120.411 kb on - strand, within SO_A0135 at 120.415 kb on + strand, within SO_A0135 at 120.415 kb on + strand, within SO_A0135 at 120.453 kb on + strand, within SO_A0135 at 120.462 kb on - strand, within SO_A0135 at 120.463 kb on + strand, within SO_A0135 at 120.482 kb on + strand, within SO_A0135 at 120.498 kb on - strand, within SO_A0135 at 120.498 kb on - strand, within SO_A0135 at 120.530 kb on + strand, within SO_A0135 at 120.538 kb on - strand, within SO_A0135 at 120.542 kb on + strand, within SO_A0135 at 120.550 kb on + strand, within SO_A0135 at 120.550 kb on + strand, within SO_A0135 at 120.550 kb on + strand, within SO_A0135 at 120.550 kb on - strand, within SO_A0135 at 120.558 kb on - strand, within SO_A0135 at 120.558 kb on - strand, within SO_A0135 at 120.558 kb on - strand, within SO_A0135 at 120.577 kb on + strand, within SO_A0135 at 120.585 kb on - strand, within SO_A0135 at 120.590 kb on - strand, within SO_A0135 at 120.590 kb on - strand, within SO_A0135 at 120.590 kb on - strand, within SO_A0135 at 120.592 kb on - strand, within SO_A0135 at 121.937 kb on - strand at 121.978 kb on + strand at 121.978 kb on + strand at 121.978 kb on + strand at 121.986 kb on - strand at 121.986 kb on - strand at 121.986 kb on - strand at 121.986 kb on - strand at 121.993 kb on + strand at 122.001 kb on + strand at 122.002 kb on - strand at 122.014 kb on + strand at 122.014 kb on + strand at 122.014 kb on + strand at 122.109 kb on - strand at 122.127 kb on + strand at 122.136 kb on + strand at 122.136 kb on - strand at 122.136 kb on - strand at 122.147 kb on + strand at 122.147 kb on + strand at 122.167 kb on - strand at 122.261 kb on + strand, within SO_A0137 at 122.423 kb on + strand at 122.431 kb on - strand at 122.431 kb on - strand at 122.431 kb on - strand at 122.441 kb on + strand at 122.455 kb on + strand at 122.455 kb on + strand at 122.504 kb on + strand at 122.504 kb on + strand at 122.540 kb on - strand at 122.630 kb on + strand at 122.672 kb on - strand at 122.699 kb on + strand at 122.785 kb on + strand, within SO_A0138 at 122.809 kb on - strand, within SO_A0138 at 122.826 kb on + strand, within SO_A0138 at 122.834 kb on - strand, within SO_A0138 at 122.858 kb on + strand, within SO_A0138 at 122.867 kb on - strand, within SO_A0138 at 122.902 kb on - strand, within SO_A0138
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 117,878 - SO_A0133 0.66 +1.4 117,910 + SO_A0133 0.69 +0.8 117,910 + SO_A0133 0.69 +1.0 117,910 + SO_A0133 0.69 +0.0 117,910 + SO_A0133 0.69 -0.1 117,918 - SO_A0133 0.70 +0.7 117,945 + SO_A0133 0.73 +0.3 117,953 + SO_A0133 0.74 +0.1 117,961 - SO_A0133 0.75 +0.1 117,961 - SO_A0133 0.75 +0.2 117,966 - SO_A0133 0.75 +1.0 117,977 + SO_A0133 0.76 +0.5 117,985 - SO_A0133 0.77 +0.8 117,985 - SO_A0133 0.77 -0.0 118,034 + SO_A0133 0.82 -0.0 118,063 - SO_A0133 0.85 -0.0 118,093 + SO_A0133 0.89 -0.5 118,103 + SO_A0133 0.90 +0.6 118,120 + +0.8 118,141 - +3.2 118,158 + -0.8 118,168 + -0.0 118,176 - +0.2 118,233 - +1.4 118,238 + -0.2 118,246 + +0.1 118,246 - +0.5 118,274 + -0.7 118,274 + +1.3 118,274 + -0.3 118,274 + -1.4 118,362 + SO_A0134 0.22 +0.2 118,374 + SO_A0134 0.25 +0.4 118,416 + SO_A0134 0.34 +1.5 118,416 + SO_A0134 0.34 +0.6 118,416 + SO_A0134 0.34 +0.3 118,418 + SO_A0134 0.34 +0.2 118,424 - SO_A0134 0.36 +0.2 118,424 - SO_A0134 0.36 +0.4 118,424 - SO_A0134 0.36 +0.5 118,424 - SO_A0134 0.36 +1.0 118,424 - SO_A0134 0.36 -0.1 118,428 + SO_A0134 0.36 -0.2 118,452 + SO_A0134 0.42 -1.7 118,460 - SO_A0134 0.43 -0.4 118,460 - SO_A0134 0.43 +1.5 118,460 - SO_A0134 0.43 +0.5 118,460 - SO_A0134 0.43 +0.1 118,476 - SO_A0134 0.47 +0.3 118,532 + SO_A0134 0.59 +0.3 118,554 + SO_A0134 0.64 +0.9 118,562 + SO_A0134 0.66 +0.3 118,562 - SO_A0134 0.66 +1.1 118,562 - SO_A0134 0.66 -0.3 118,567 + SO_A0134 0.67 +0.9 118,580 + SO_A0134 0.70 -0.2 118,580 + SO_A0134 0.70 +1.0 118,580 + SO_A0134 0.70 +0.9 118,580 + SO_A0134 0.70 +0.8 118,580 + SO_A0134 0.70 -2.1 118,580 + SO_A0134 0.70 +0.8 118,580 + SO_A0134 0.70 +0.1 118,580 + SO_A0134 0.70 +0.0 118,580 + SO_A0134 0.70 +0.2 118,580 + SO_A0134 0.70 -0.9 118,580 + SO_A0134 0.70 -0.0 118,580 + SO_A0134 0.70 -0.6 118,580 + SO_A0134 0.70 +0.1 118,580 + SO_A0134 0.70 +0.2 118,580 + SO_A0134 0.70 -0.3 118,580 + SO_A0134 0.70 +1.4 118,580 + SO_A0134 0.70 +0.6 118,581 - SO_A0134 0.70 -0.7 118,588 - SO_A0134 0.72 +0.7 118,588 - SO_A0134 0.72 +0.7 118,588 - SO_A0134 0.72 -0.2 118,588 - SO_A0134 0.72 -0.1 118,588 - SO_A0134 0.72 +1.1 118,588 - SO_A0134 0.72 +0.3 118,623 + SO_A0134 0.79 +0.2 118,623 + SO_A0134 0.79 -0.0 118,645 + SO_A0134 0.84 -0.1 118,659 - SO_A0134 0.87 -0.0 118,678 + +0.3 118,695 + +2.0 118,695 + +0.0 118,695 + -1.6 118,695 + +0.1 118,696 - +1.5 118,702 + +0.3 118,716 + -0.4 118,717 - -0.4 118,724 - -0.5 118,736 + +0.3 118,745 + +0.4 118,753 - -0.3 118,757 + +1.6 118,757 + -0.2 118,767 + +0.6 118,767 + -0.1 118,767 + -1.1 118,767 + +1.0 118,767 + +0.7 118,767 + +0.9 118,775 - -0.7 118,775 - +0.7 118,789 + +0.6 118,798 + -0.4 118,804 + +0.4 118,806 - +0.5 118,812 - +0.6 118,812 - +0.4 118,821 + -0.0 118,841 + +0.4 118,846 - +0.6 118,860 - -0.1 118,883 + +0.3 118,899 + +0.4 118,899 + +0.1 118,907 - +0.1 118,907 - -0.1 118,907 - -0.3 118,907 - +0.5 118,933 + -0.3 118,960 - +0.5 119,011 - -0.5 119,018 + +0.1 119,026 - -0.4 119,031 - -0.3 119,034 - +0.1 119,167 + +1.1 119,175 - SO_A0135 0.10 +0.0 119,200 - SO_A0135 0.11 -0.1 119,209 - SO_A0135 0.11 +0.1 119,242 + SO_A0135 0.12 -0.7 119,245 + SO_A0135 0.12 +1.5 119,245 + SO_A0135 0.12 -0.8 119,245 + SO_A0135 0.12 +0.6 119,305 - SO_A0135 0.14 +0.6 119,307 + SO_A0135 0.14 +0.4 119,307 + SO_A0135 0.14 +0.6 119,315 - SO_A0135 0.15 +0.6 119,315 - SO_A0135 0.15 +0.2 119,315 - SO_A0135 0.15 +0.5 119,315 - SO_A0135 0.15 +0.0 120,158 + SO_A0135 0.42 +1.1 120,183 + SO_A0135 0.42 -0.0 120,199 - SO_A0135 0.43 +0.9 120,218 - SO_A0135 0.43 -0.9 120,270 - SO_A0135 0.45 -0.2 120,312 + SO_A0135 0.46 -0.1 120,312 + SO_A0135 0.46 +1.4 120,320 - SO_A0135 0.47 -0.3 120,320 - SO_A0135 0.47 +0.7 120,324 + SO_A0135 0.47 -0.7 120,332 - SO_A0135 0.47 +0.1 120,339 - SO_A0135 0.47 +0.1 120,377 - SO_A0135 0.49 -0.4 120,403 + SO_A0135 0.49 +0.9 120,411 - SO_A0135 0.50 +0.7 120,411 - SO_A0135 0.50 +0.7 120,415 + SO_A0135 0.50 +1.4 120,415 + SO_A0135 0.50 +0.9 120,453 + SO_A0135 0.51 +0.5 120,462 - SO_A0135 0.51 +0.4 120,463 + SO_A0135 0.51 -0.1 120,482 + SO_A0135 0.52 -1.5 120,498 - SO_A0135 0.52 -0.1 120,498 - SO_A0135 0.52 +0.3 120,530 + SO_A0135 0.53 -0.1 120,538 - SO_A0135 0.54 +0.1 120,542 + SO_A0135 0.54 +1.2 120,550 + SO_A0135 0.54 -0.5 120,550 + SO_A0135 0.54 +2.2 120,550 + SO_A0135 0.54 +0.6 120,550 - SO_A0135 0.54 +0.8 120,558 - SO_A0135 0.54 +0.6 120,558 - SO_A0135 0.54 +0.1 120,558 - SO_A0135 0.54 -1.4 120,577 + SO_A0135 0.55 +0.5 120,585 - SO_A0135 0.55 -0.6 120,590 - SO_A0135 0.55 +0.3 120,590 - SO_A0135 0.55 -0.1 120,590 - SO_A0135 0.55 +1.0 120,592 - SO_A0135 0.55 -0.3 121,937 - +0.7 121,978 + -0.6 121,978 + -0.4 121,978 + +0.7 121,986 - +0.3 121,986 - +0.6 121,986 - +0.2 121,986 - +0.6 121,993 + +0.9 122,001 + +0.7 122,002 - +0.1 122,014 + -0.8 122,014 + -0.2 122,014 + +0.1 122,109 - +0.6 122,127 + -0.3 122,136 + -0.5 122,136 - -0.2 122,136 - +0.4 122,147 + +0.6 122,147 + -0.4 122,167 - +0.1 122,261 + SO_A0137 0.60 +0.2 122,423 + +0.7 122,431 - +0.3 122,431 - +0.5 122,431 - +0.3 122,441 + +0.3 122,455 + -1.4 122,455 + +0.2 122,504 + -0.8 122,504 + +0.1 122,540 - -0.2 122,630 + -0.7 122,672 - +0.5 122,699 + -0.3 122,785 + SO_A0138 0.13 +0.3 122,809 - SO_A0138 0.14 +0.3 122,826 + SO_A0138 0.14 +0.1 122,834 - SO_A0138 0.15 +0.3 122,858 + SO_A0138 0.16 -0.8 122,867 - SO_A0138 0.16 +0.4 122,902 - SO_A0138 0.17 -1.8
Or see this region's nucleotide sequence