Strain Fitness in Shewanella oneidensis MR-1 around SO_A0036

Experiment: SBM - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0035 and SO_A0175 are separated by 66 nucleotidesSO_A0175 and SO_A0036 are separated by 115 nucleotidesSO_A0036 and SOA0037 are separated by 349 nucleotides SOA0035: SOA0035 - ISSod4, transposase (NCBI ptt file), at 26,127 to 27,329 SOA0035 SO_A0175: SO_A0175 - no description, at 27,396 to 27,656 _A0175 SO_A0036: SO_A0036 - HicB-related protein (NCBI), at 27,772 to 27,996 _A0036 SOA0037: SOA0037 - ISSod1, transposase OrfB (NCBI ptt file), at 28,346 to 29,155 SOA0037 SO_A0038: SO_A0038 - ISSod1, transposase OrfA (NCBI), at 28,346 to 29,505 _A0038 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 27.394 kb on + strandat 27.401 kb on - strandat 27.402 kb on - strandat 27.416 kb on - strandat 27.417 kb on + strandat 27.417 kb on + strandat 27.417 kb on - strandat 27.423 kb on + strand, within SO_A0175at 27.423 kb on + strand, within SO_A0175at 27.425 kb on - strand, within SO_A0175at 27.439 kb on + strand, within SO_A0175at 27.447 kb on - strand, within SO_A0175at 27.451 kb on + strand, within SO_A0175at 27.453 kb on - strand, within SO_A0175at 27.453 kb on - strand, within SO_A0175at 27.459 kb on - strand, within SO_A0175at 27.462 kb on - strand, within SO_A0175at 27.504 kb on + strand, within SO_A0175at 27.506 kb on + strand, within SO_A0175at 27.506 kb on + strand, within SO_A0175at 27.506 kb on + strand, within SO_A0175at 27.506 kb on + strand, within SO_A0175at 27.507 kb on - strand, within SO_A0175at 27.507 kb on - strand, within SO_A0175at 27.507 kb on - strand, within SO_A0175at 27.512 kb on - strand, within SO_A0175at 27.512 kb on - strand, within SO_A0175at 27.512 kb on - strand, within SO_A0175at 27.512 kb on - strand, within SO_A0175at 27.545 kb on + strand, within SO_A0175at 27.545 kb on + strand, within SO_A0175at 27.605 kb on + strand, within SO_A0175at 27.607 kb on + strand, within SO_A0175at 27.613 kb on + strand, within SO_A0175at 27.613 kb on - strand, within SO_A0175at 27.613 kb on - strand, within SO_A0175at 27.617 kb on + strand, within SO_A0175at 27.617 kb on + strand, within SO_A0175at 27.623 kb on + strand, within SO_A0175at 27.623 kb on + strand, within SO_A0175at 27.626 kb on - strand, within SO_A0175at 27.631 kb on - strandat 27.631 kb on - strandat 27.631 kb on - strandat 27.690 kb on + strandat 27.705 kb on - strandat 27.706 kb on + strandat 27.710 kb on + strandat 27.711 kb on + strandat 27.711 kb on + strandat 27.711 kb on + strandat 27.718 kb on + strandat 27.759 kb on + strandat 27.759 kb on + strandat 27.759 kb on + strandat 27.760 kb on + strandat 27.788 kb on + strandat 27.788 kb on + strandat 27.788 kb on + strandat 27.788 kb on + strandat 27.788 kb on + strandat 27.788 kb on + strandat 27.789 kb on + strandat 27.789 kb on + strandat 27.789 kb on + strandat 27.789 kb on + strandat 27.789 kb on + strandat 27.796 kb on - strand, within SO_A0036at 27.796 kb on - strand, within SO_A0036at 27.797 kb on - strand, within SO_A0036at 27.799 kb on + strand, within SO_A0036at 27.811 kb on + strand, within SO_A0036at 27.811 kb on + strand, within SO_A0036at 27.811 kb on + strand, within SO_A0036at 27.811 kb on + strand, within SO_A0036at 27.811 kb on + strand, within SO_A0036at 27.821 kb on + strand, within SO_A0036at 27.829 kb on - strand, within SO_A0036at 27.849 kb on + strand, within SO_A0036at 27.850 kb on + strand, within SO_A0036at 27.850 kb on + strand, within SO_A0036at 27.850 kb on + strand, within SO_A0036at 27.867 kb on - strand, within SO_A0036at 27.876 kb on + strand, within SO_A0036at 27.898 kb on + strand, within SO_A0036at 27.898 kb on + strand, within SO_A0036at 27.898 kb on + strand, within SO_A0036at 27.898 kb on - strand, within SO_A0036at 27.900 kb on - strand, within SO_A0036at 27.906 kb on - strand, within SO_A0036at 27.906 kb on - strand, within SO_A0036at 27.929 kb on + strand, within SO_A0036at 27.930 kb on + strand, within SO_A0036at 27.947 kb on + strand, within SO_A0036at 27.947 kb on + strand, within SO_A0036at 27.955 kb on - strand, within SO_A0036at 27.969 kb on + strand, within SO_A0036at 27.977 kb on + strandat 27.985 kb on - strandat 28.001 kb on + strandat 28.002 kb on + strandat 28.010 kb on - strandat 28.015 kb on + strandat 28.023 kb on - strandat 28.030 kb on - strandat 28.036 kb on + strandat 28.090 kb on - strandat 28.105 kb on + strandat 28.105 kb on + strandat 28.105 kb on + strandat 28.105 kb on - strandat 28.123 kb on - strandat 28.159 kb on + strandat 28.174 kb on + strandat 28.182 kb on - strandat 28.204 kb on - strandat 28.329 kb on + strandat 28.335 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.342 kb on - strandat 28.345 kb on - strandat 28.347 kb on - strandat 28.347 kb on - strandat 28.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SBM - with RNA protect
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27,394 + +0.1
27,401 - +0.2
27,402 - -0.2
27,416 - +0.3
27,417 + -1.1
27,417 + +1.3
27,417 - +0.4
27,423 + SO_A0175 0.10 +0.8
27,423 + SO_A0175 0.10 +0.7
27,425 - SO_A0175 0.11 +0.1
27,439 + SO_A0175 0.16 +0.2
27,447 - SO_A0175 0.20 -0.1
27,451 + SO_A0175 0.21 +0.2
27,453 - SO_A0175 0.22 +0.9
27,453 - SO_A0175 0.22 +0.6
27,459 - SO_A0175 0.24 +0.8
27,462 - SO_A0175 0.25 -0.4
27,504 + SO_A0175 0.41 +1.2
27,506 + SO_A0175 0.42 +0.3
27,506 + SO_A0175 0.42 +0.8
27,506 + SO_A0175 0.42 -0.2
27,506 + SO_A0175 0.42 +1.2
27,507 - SO_A0175 0.43 +0.6
27,507 - SO_A0175 0.43 -0.5
27,507 - SO_A0175 0.43 -0.8
27,512 - SO_A0175 0.44 -0.1
27,512 - SO_A0175 0.44 +0.7
27,512 - SO_A0175 0.44 -0.0
27,512 - SO_A0175 0.44 -0.1
27,545 + SO_A0175 0.57 -1.1
27,545 + SO_A0175 0.57 +1.0
27,605 + SO_A0175 0.80 +2.0
27,607 + SO_A0175 0.81 -0.6
27,613 + SO_A0175 0.83 +0.3
27,613 - SO_A0175 0.83 +0.5
27,613 - SO_A0175 0.83 +0.7
27,617 + SO_A0175 0.85 +0.5
27,617 + SO_A0175 0.85 +0.3
27,623 + SO_A0175 0.87 +1.2
27,623 + SO_A0175 0.87 -0.3
27,626 - SO_A0175 0.88 -1.2
27,631 - +0.1
27,631 - +0.0
27,631 - -0.1
27,690 + -0.3
27,705 - -0.8
27,706 + +0.5
27,710 + +1.4
27,711 + -1.1
27,711 + +0.6
27,711 + +0.4
27,718 + -0.1
27,759 + +0.0
27,759 + +0.5
27,759 + +0.7
27,760 + +1.0
27,788 + -0.4
27,788 + -0.5
27,788 + -0.6
27,788 + +0.7
27,788 + +1.4
27,788 + -0.2
27,789 + +0.0
27,789 + +0.9
27,789 + -1.9
27,789 + +0.6
27,789 + -0.1
27,796 - SO_A0036 0.11 +0.1
27,796 - SO_A0036 0.11 +0.4
27,797 - SO_A0036 0.11 +1.0
27,799 + SO_A0036 0.12 +0.6
27,811 + SO_A0036 0.17 -0.5
27,811 + SO_A0036 0.17 -0.1
27,811 + SO_A0036 0.17 +0.5
27,811 + SO_A0036 0.17 +0.3
27,811 + SO_A0036 0.17 +0.8
27,821 + SO_A0036 0.22 +0.4
27,829 - SO_A0036 0.25 -0.4
27,849 + SO_A0036 0.34 +1.6
27,850 + SO_A0036 0.35 -2.4
27,850 + SO_A0036 0.35 +0.1
27,850 + SO_A0036 0.35 +1.3
27,867 - SO_A0036 0.42 -2.1
27,876 + SO_A0036 0.46 +0.5
27,898 + SO_A0036 0.56 -1.0
27,898 + SO_A0036 0.56 +0.3
27,898 + SO_A0036 0.56 +0.0
27,898 - SO_A0036 0.56 +0.4
27,900 - SO_A0036 0.57 +0.9
27,906 - SO_A0036 0.60 -1.0
27,906 - SO_A0036 0.60 -0.3
27,929 + SO_A0036 0.70 -0.0
27,930 + SO_A0036 0.70 +0.5
27,947 + SO_A0036 0.78 -0.7
27,947 + SO_A0036 0.78 +0.1
27,955 - SO_A0036 0.81 +1.5
27,969 + SO_A0036 0.88 +0.5
27,977 + +0.6
27,985 - +1.2
28,001 + +1.0
28,002 + +0.2
28,010 - +0.7
28,015 + -0.5
28,023 - +1.6
28,030 - +0.6
28,036 + +0.6
28,090 - -0.2
28,105 + -0.1
28,105 + +0.3
28,105 + +0.0
28,105 - +0.9
28,123 - -0.3
28,159 + +0.4
28,174 + +0.2
28,182 - +0.9
28,204 - +2.0
28,329 + +0.1
28,335 - +0.3
28,342 - +0.6
28,342 - -0.0
28,342 - +0.4
28,342 - -0.0
28,342 - +1.6
28,342 - +0.6
28,342 - +1.3
28,342 - +1.1
28,342 - +0.5
28,342 - -0.1
28,342 - +0.0
28,342 - -0.1
28,342 - -0.3
28,342 - -0.5
28,342 - +0.2
28,342 - +0.7
28,342 - -0.2
28,342 - +1.7
28,342 - +0.6
28,345 - -0.5
28,347 - +0.5
28,347 - -1.2
28,347 - +0.5

Or see this region's nucleotide sequence