Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4048 and SO4050 are separated by 471 nucleotides SO4050 and SO4051 are separated by 16 nucleotides
SO4048: SO4048 - cytochrome c family protein (NCBI ptt file), at 4,201,835 to 4,202,461
SO4048
SO4050: SO4050 - conserved hypothetical protein (NCBI ptt file), at 4,202,933 to 4,203,961
SO4050
SO4051: SO4051 - HlyD family secretion protein (NCBI ptt file), at 4,203,978 to 4,205,051
SO4051
Position (kb)
4202
4203
4204 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4202.012 kb on + strand, within SO4048 at 4202.130 kb on + strand, within SO4048 at 4202.133 kb on - strand, within SO4048 at 4202.326 kb on + strand, within SO4048 at 4202.399 kb on + strand at 4202.399 kb on + strand at 4202.399 kb on + strand at 4202.407 kb on - strand at 4202.412 kb on - strand at 4202.575 kb on - strand at 4202.642 kb on + strand at 4202.953 kb on + strand at 4203.069 kb on + strand, within SO4050 at 4203.129 kb on - strand, within SO4050 at 4203.157 kb on - strand, within SO4050 at 4203.174 kb on + strand, within SO4050 at 4203.174 kb on + strand, within SO4050 at 4203.182 kb on - strand, within SO4050 at 4203.253 kb on + strand, within SO4050 at 4203.271 kb on - strand, within SO4050 at 4203.476 kb on + strand, within SO4050 at 4203.560 kb on + strand, within SO4050 at 4203.603 kb on - strand, within SO4050 at 4203.698 kb on + strand, within SO4050 at 4203.877 kb on + strand at 4203.885 kb on - strand at 4203.896 kb on + strand at 4204.006 kb on + strand at 4204.006 kb on + strand at 4204.006 kb on + strand at 4204.014 kb on - strand at 4204.089 kb on - strand, within SO4051 at 4204.095 kb on - strand, within SO4051 at 4204.122 kb on + strand, within SO4051 at 4204.139 kb on + strand, within SO4051 at 4204.139 kb on + strand, within SO4051 at 4204.139 kb on + strand, within SO4051 at 4204.142 kb on - strand, within SO4051 at 4204.147 kb on - strand, within SO4051 at 4204.147 kb on - strand, within SO4051 at 4204.147 kb on - strand, within SO4051 at 4204.147 kb on - strand, within SO4051 at 4204.149 kb on - strand, within SO4051 at 4204.222 kb on - strand, within SO4051 at 4204.227 kb on - strand, within SO4051 at 4204.234 kb on - strand, within SO4051 at 4204.240 kb on + strand, within SO4051 at 4204.324 kb on - strand, within SO4051 at 4204.389 kb on - strand, within SO4051 at 4204.402 kb on - strand, within SO4051 at 4204.519 kb on - strand, within SO4051 at 4204.519 kb on - strand, within SO4051 at 4204.554 kb on - strand, within SO4051 at 4204.836 kb on - strand, within SO4051 at 4204.874 kb on + strand, within SO4051 at 4204.881 kb on + strand, within SO4051 at 4204.882 kb on - strand, within SO4051 at 4204.915 kb on - strand, within SO4051 at 4204.933 kb on + strand, within SO4051 at 4204.933 kb on + strand, within SO4051 at 4204.941 kb on - strand, within SO4051 at 4204.941 kb on - strand, within SO4051
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 4,202,012 + SO4048 0.28 -0.2 4,202,130 + SO4048 0.47 +0.7 4,202,133 - SO4048 0.48 -0.9 4,202,326 + SO4048 0.78 -0.1 4,202,399 + -0.5 4,202,399 + +0.5 4,202,399 + -0.1 4,202,407 - -1.1 4,202,412 - -0.7 4,202,575 - +0.7 4,202,642 + +1.4 4,202,953 + -0.6 4,203,069 + SO4050 0.13 +0.3 4,203,129 - SO4050 0.19 +0.4 4,203,157 - SO4050 0.22 +0.2 4,203,174 + SO4050 0.23 +0.9 4,203,174 + SO4050 0.23 +0.3 4,203,182 - SO4050 0.24 +0.5 4,203,253 + SO4050 0.31 -0.1 4,203,271 - SO4050 0.33 +1.2 4,203,476 + SO4050 0.53 +0.9 4,203,560 + SO4050 0.61 -0.5 4,203,603 - SO4050 0.65 +0.8 4,203,698 + SO4050 0.74 +1.5 4,203,877 + -0.0 4,203,885 - -0.5 4,203,896 + +1.3 4,204,006 + -3.0 4,204,006 + +1.1 4,204,006 + -1.2 4,204,014 - -0.1 4,204,089 - SO4051 0.10 -0.1 4,204,095 - SO4051 0.11 +0.6 4,204,122 + SO4051 0.13 +2.3 4,204,139 + SO4051 0.15 -0.9 4,204,139 + SO4051 0.15 +0.2 4,204,139 + SO4051 0.15 +1.9 4,204,142 - SO4051 0.15 +0.1 4,204,147 - SO4051 0.16 -0.5 4,204,147 - SO4051 0.16 +0.2 4,204,147 - SO4051 0.16 +0.3 4,204,147 - SO4051 0.16 +1.1 4,204,149 - SO4051 0.16 +0.2 4,204,222 - SO4051 0.23 -0.9 4,204,227 - SO4051 0.23 +0.6 4,204,234 - SO4051 0.24 +0.7 4,204,240 + SO4051 0.24 -0.1 4,204,324 - SO4051 0.32 -0.6 4,204,389 - SO4051 0.38 +0.8 4,204,402 - SO4051 0.39 -1.7 4,204,519 - SO4051 0.50 -0.4 4,204,519 - SO4051 0.50 -1.7 4,204,554 - SO4051 0.54 -0.8 4,204,836 - SO4051 0.80 +0.2 4,204,874 + SO4051 0.83 -0.7 4,204,881 + SO4051 0.84 +0.5 4,204,882 - SO4051 0.84 +0.9 4,204,915 - SO4051 0.87 +0.1 4,204,933 + SO4051 0.89 -0.5 4,204,933 + SO4051 0.89 -0.2 4,204,941 - SO4051 0.90 -0.1 4,204,941 - SO4051 0.90 -1.1
Or see this region's nucleotide sequence