Strain Fitness in Shewanella oneidensis MR-1 around SO4050

Experiment: SBM - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4048 and SO4050 are separated by 471 nucleotidesSO4050 and SO4051 are separated by 16 nucleotides SO4048: SO4048 - cytochrome c family protein (NCBI ptt file), at 4,201,835 to 4,202,461 SO4048 SO4050: SO4050 - conserved hypothetical protein (NCBI ptt file), at 4,202,933 to 4,203,961 SO4050 SO4051: SO4051 - HlyD family secretion protein (NCBI ptt file), at 4,203,978 to 4,205,051 SO4051 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4202.012 kb on + strand, within SO4048at 4202.130 kb on + strand, within SO4048at 4202.133 kb on - strand, within SO4048at 4202.326 kb on + strand, within SO4048at 4202.399 kb on + strandat 4202.399 kb on + strandat 4202.399 kb on + strandat 4202.407 kb on - strandat 4202.412 kb on - strandat 4202.575 kb on - strandat 4202.642 kb on + strandat 4202.953 kb on + strandat 4203.069 kb on + strand, within SO4050at 4203.129 kb on - strand, within SO4050at 4203.157 kb on - strand, within SO4050at 4203.174 kb on + strand, within SO4050at 4203.174 kb on + strand, within SO4050at 4203.182 kb on - strand, within SO4050at 4203.253 kb on + strand, within SO4050at 4203.271 kb on - strand, within SO4050at 4203.476 kb on + strand, within SO4050at 4203.560 kb on + strand, within SO4050at 4203.603 kb on - strand, within SO4050at 4203.698 kb on + strand, within SO4050at 4203.877 kb on + strandat 4203.885 kb on - strandat 4203.896 kb on + strandat 4204.006 kb on + strandat 4204.006 kb on + strandat 4204.006 kb on + strandat 4204.014 kb on - strandat 4204.089 kb on - strand, within SO4051at 4204.095 kb on - strand, within SO4051at 4204.122 kb on + strand, within SO4051at 4204.139 kb on + strand, within SO4051at 4204.139 kb on + strand, within SO4051at 4204.139 kb on + strand, within SO4051at 4204.142 kb on - strand, within SO4051at 4204.147 kb on - strand, within SO4051at 4204.147 kb on - strand, within SO4051at 4204.147 kb on - strand, within SO4051at 4204.147 kb on - strand, within SO4051at 4204.149 kb on - strand, within SO4051at 4204.222 kb on - strand, within SO4051at 4204.227 kb on - strand, within SO4051at 4204.234 kb on - strand, within SO4051at 4204.240 kb on + strand, within SO4051at 4204.324 kb on - strand, within SO4051at 4204.389 kb on - strand, within SO4051at 4204.402 kb on - strand, within SO4051at 4204.519 kb on - strand, within SO4051at 4204.519 kb on - strand, within SO4051at 4204.554 kb on - strand, within SO4051at 4204.836 kb on - strand, within SO4051at 4204.874 kb on + strand, within SO4051at 4204.881 kb on + strand, within SO4051at 4204.882 kb on - strand, within SO4051at 4204.915 kb on - strand, within SO4051at 4204.933 kb on + strand, within SO4051at 4204.933 kb on + strand, within SO4051at 4204.941 kb on - strand, within SO4051at 4204.941 kb on - strand, within SO4051

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Per-strain Table

Position Strand Gene LocusTag Fraction SBM - with RNA protect
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4,202,012 + SO4048 0.28 -0.2
4,202,130 + SO4048 0.47 +0.7
4,202,133 - SO4048 0.48 -0.9
4,202,326 + SO4048 0.78 -0.1
4,202,399 + -0.5
4,202,399 + +0.5
4,202,399 + -0.1
4,202,407 - -1.1
4,202,412 - -0.7
4,202,575 - +0.7
4,202,642 + +1.4
4,202,953 + -0.6
4,203,069 + SO4050 0.13 +0.3
4,203,129 - SO4050 0.19 +0.4
4,203,157 - SO4050 0.22 +0.2
4,203,174 + SO4050 0.23 +0.9
4,203,174 + SO4050 0.23 +0.3
4,203,182 - SO4050 0.24 +0.5
4,203,253 + SO4050 0.31 -0.1
4,203,271 - SO4050 0.33 +1.2
4,203,476 + SO4050 0.53 +0.9
4,203,560 + SO4050 0.61 -0.5
4,203,603 - SO4050 0.65 +0.8
4,203,698 + SO4050 0.74 +1.5
4,203,877 + -0.0
4,203,885 - -0.5
4,203,896 + +1.3
4,204,006 + -3.0
4,204,006 + +1.1
4,204,006 + -1.2
4,204,014 - -0.1
4,204,089 - SO4051 0.10 -0.1
4,204,095 - SO4051 0.11 +0.6
4,204,122 + SO4051 0.13 +2.3
4,204,139 + SO4051 0.15 -0.9
4,204,139 + SO4051 0.15 +0.2
4,204,139 + SO4051 0.15 +1.9
4,204,142 - SO4051 0.15 +0.1
4,204,147 - SO4051 0.16 -0.5
4,204,147 - SO4051 0.16 +0.2
4,204,147 - SO4051 0.16 +0.3
4,204,147 - SO4051 0.16 +1.1
4,204,149 - SO4051 0.16 +0.2
4,204,222 - SO4051 0.23 -0.9
4,204,227 - SO4051 0.23 +0.6
4,204,234 - SO4051 0.24 +0.7
4,204,240 + SO4051 0.24 -0.1
4,204,324 - SO4051 0.32 -0.6
4,204,389 - SO4051 0.38 +0.8
4,204,402 - SO4051 0.39 -1.7
4,204,519 - SO4051 0.50 -0.4
4,204,519 - SO4051 0.50 -1.7
4,204,554 - SO4051 0.54 -0.8
4,204,836 - SO4051 0.80 +0.2
4,204,874 + SO4051 0.83 -0.7
4,204,881 + SO4051 0.84 +0.5
4,204,882 - SO4051 0.84 +0.9
4,204,915 - SO4051 0.87 +0.1
4,204,933 + SO4051 0.89 -0.5
4,204,933 + SO4051 0.89 -0.2
4,204,941 - SO4051 0.90 -0.1
4,204,941 - SO4051 0.90 -1.1

Or see this region's nucleotide sequence