Strain Fitness in Shewanella oneidensis MR-1 around SO2460

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
2,577,798	-	cga	SO2459	0.72	-0.0
2,577,861	+	cga	SO2459	0.74	-0.2
2,577,869	-	cga	SO2459	0.74	+0.4
2,577,974	+	cga	SO2459	0.79	-0.0
2,578,063	+	cga	SO2459	0.82	+0.9
2,578,119	-	cga	SO2459	0.84	-1.0
2,578,240	-	cga	SO2459	0.89	-0.8
2,578,355	-				+0.4
2,578,566	+				-1.6
2,578,574	-				+0.4
2,578,583	-				-0.3
2,578,849	-				+1.1
2,578,918	-		SO2460	0.10	+0.2
2,579,017	-		SO2460	0.19	-0.2
2,579,053	+		SO2460	0.22	-0.3
2,579,053	-		SO2460	0.22	-1.5
2,579,061	-		SO2460	0.23	+0.0
2,579,061	-		SO2460	0.23	+0.1
2,579,067	+		SO2460	0.23	+0.5
2,579,091	-		SO2460	0.25	+0.4
2,579,098	-		SO2460	0.26	-0.3
2,579,098	-		SO2460	0.26	-0.8
2,579,098	-		SO2460	0.26	+0.7
2,579,124	+		SO2460	0.28	+0.1
2,579,138	+		SO2460	0.29	-0.0
2,579,170	+		SO2460	0.32	+1.0
2,579,178	-		SO2460	0.32	-0.1
2,579,178	-		SO2460	0.32	+0.5
2,579,178	-		SO2460	0.32	+0.6
2,579,207	+		SO2460	0.35	-2.1
2,579,255	+		SO2460	0.39	+0.4
2,579,321	+		SO2460	0.44	+2.5
2,579,329	-		SO2460	0.45	+0.7
2,579,329	-		SO2460	0.45	+1.7
2,579,363	+		SO2460	0.48	+0.0
2,579,363	+		SO2460	0.48	-0.1
2,579,363	+		SO2460	0.48	-0.4
2,579,363	+		SO2460	0.48	+0.5
2,579,363	+		SO2460	0.48	+0.4
2,579,363	+		SO2460	0.48	+0.5
2,579,363	+		SO2460	0.48	+1.7
2,579,363	+		SO2460	0.48	-0.3
2,579,363	+		SO2460	0.48	-1.6
2,579,363	+		SO2460	0.48	-0.6
2,579,363	+		SO2460	0.48	-0.7
2,579,363	+		SO2460	0.48	+0.4
2,579,363	+		SO2460	0.48	-1.1
2,579,364	+		SO2460	0.48	+0.2
2,579,364	+		SO2460	0.48	+0.7
2,579,369	+		SO2460	0.49	-0.6
2,579,371	-		SO2460	0.49	+0.1
2,579,371	-		SO2460	0.49	+0.3
2,579,371	-		SO2460	0.49	+0.3
2,579,371	-		SO2460	0.49	-0.3
2,579,371	-		SO2460	0.49	+0.4
2,579,371	-		SO2460	0.49	+0.8
2,579,371	-		SO2460	0.49	+0.4
2,579,371	-		SO2460	0.49	+2.5
2,579,371	-		SO2460	0.49	+0.4
2,579,371	-		SO2460	0.49	-0.8
2,579,371	-		SO2460	0.49	+0.6
2,579,371	-		SO2460	0.49	+0.7
2,579,371	-		SO2460	0.49	+0.7
2,579,371	-		SO2460	0.49	+0.7
2,579,371	-		SO2460	0.49	+0.7
2,579,371	-		SO2460	0.49	+0.3
2,579,372	-		SO2460	0.49	-0.2
2,579,372	-		SO2460	0.49	+0.8
2,579,372	-		SO2460	0.49	-0.1
2,579,372	-		SO2460	0.49	+1.0
2,579,443	+		SO2460	0.55	+0.2
2,579,443	+		SO2460	0.55	+1.1
2,579,451	-		SO2460	0.55	-0.5
2,579,451	-		SO2460	0.55	+0.3
2,579,451	-		SO2460	0.55	+0.0
2,579,451	-		SO2460	0.55	-0.1
2,579,535	+		SO2460	0.63	+0.3
2,579,553	-		SO2460	0.64	-0.6
2,579,563	+		SO2460	0.65	+0.6
2,579,571	-		SO2460	0.66	-1.1
2,579,578	+		SO2460	0.66	+0.2
2,579,586	-		SO2460	0.67	+0.0
2,579,644	+		SO2460	0.72	+0.2
2,579,685	-		SO2460	0.75	+1.0
2,579,688	+		SO2460	0.75	+0.2
2,579,696	-		SO2460	0.76	-0.2
2,579,696	-		SO2460	0.76	+0.5
2,579,718	+		SO2460	0.78	+1.1
2,579,726	-		SO2460	0.79	-2.1
2,579,726	-		SO2460	0.79	+0.4
2,579,726	-		SO2460	0.79	+0.4
2,579,726	-		SO2460	0.79	-0.3
2,579,738	-		SO2460	0.80	+0.7
2,579,771	-		SO2460	0.82	-0.8
2,579,819	+		SO2460	0.86	-2.3
2,579,844	-		SO2460	0.89	+1.6
2,579,846	+		SO2460	0.89	+0.3
2,579,848	+		SO2460	0.89	+2.4
2,579,848	+		SO2460	0.89	+0.4
2,579,848	+		SO2460	0.89	-0.7
2,579,848	+		SO2460	0.89	-1.4
2,579,848	+		SO2460	0.89	+1.9
2,579,848	+		SO2460	0.89	+1.2
2,579,856	-		SO2460	0.90	+0.8
2,579,856	-		SO2460	0.90	+1.2
2,579,856	-		SO2460	0.90	+0.3
2,579,856	-		SO2460	0.90	-0.9
2,579,856	-		SO2460	0.90	+0.6
2,579,856	-		SO2460	0.90	+0.2
2,579,856	-		SO2460	0.90	+0.1
2,579,856	-		SO2460	0.90	+0.5
2,579,856	-		SO2460	0.90	+0.4
2,579,856	-		SO2460	0.90	-0.0
2,579,856	-		SO2460	0.90	+0.5
2,579,856	-		SO2460	0.90	-0.2
2,579,864	+				+0.9
2,579,877	-				-0.2
2,579,893	+				-2.4
2,579,893	+				-1.1
2,579,893	+				-0.1
2,579,893	+				-0.7
2,579,901	-				+0.7
2,579,962	+				+0.8
2,579,962	+				+0.0
2,579,962	+				+1.2
2,579,962	+				+0.4
2,579,962	+				+0.3
2,579,962	+				+0.2
2,579,967	+				-0.3
2,579,967	+				+0.2
2,579,967	+				-0.6
2,579,969	-				+1.8
2,579,970	-				-0.0
2,579,970	-				+0.0
2,579,970	-				-0.1
2,579,972	+				-0.1
2,579,975	-				-1.1
2,579,980	-				+1.3
2,579,980	-				+1.2
2,580,033	+				+0.8
2,580,036	-				+1.0
2,580,070	-				-0.2
2,580,105	+				+0.9
2,580,108	-				+0.0
2,580,135	-				+1.5
2,580,150	+				+0.1
2,580,150	-				+0.4
2,580,220	-				+0.6
2,580,266	+				-0.1
2,580,284	-				-0.9
2,580,288	+				+0.3
2,580,288	+				+0.2
2,580,309	-				+0.5
2,580,395	+				+0.1
2,580,403	-				+0.6
2,580,403	-				-0.0
2,580,403	-				+1.2
2,580,403	-				+1.0
2,580,403	-				+0.1
2,580,407	+				-0.3
2,580,410	-				+2.5
2,580,410	-				+0.4
2,580,413	+				+1.2
2,580,416	+				+0.3
2,580,416	+				-0.0
2,580,416	+				+0.8
2,580,416	+				+1.0
2,580,423	+				-0.4
2,580,423	+				-0.4
2,580,423	+				+1.2
2,580,424	-				+1.0
2,580,424	-				-0.3
2,580,424	-				-0.8
2,580,424	-				+0.3
2,580,424	-				-0.4
2,580,424	-				-1.2
2,580,424	-				+0.0
2,580,424	-				-1.4
2,580,425	+				+0.3
2,580,425	+				+1.4
2,580,428	+				-1.7
2,580,431	-				-0.6
2,580,437	+				+2.2
2,580,438	-				-1.7
2,580,438	-				-1.2
2,580,438	-				+0.3
2,580,507	+				+0.3
2,580,507	+				+0.4
2,580,507	+				+0.4
2,580,507	+				-0.3
2,580,507	+				-0.8
2,580,515	-				+1.7
2,580,515	-				-0.8
2,580,515	-				-0.3
2,580,515	-				+0.1
2,580,515	-				+0.0
2,580,515	-				+0.4
2,580,515	-				-0.2
2,580,515	-				-0.2
2,580,601	+				-0.2
2,580,601	+				+0.9
2,580,609	-				+1.3
2,580,619	+				+0.8
2,580,619	+				-0.5
2,580,635	+				-0.6
2,580,640	-				+0.4
2,580,643	-				+0.2
2,580,655	-				-0.7
2,580,668	+				+0.3
2,580,669	+				+1.9
2,580,677	-				-0.4
2,580,677	-				+0.2
2,580,695	+		SO_2461	0.13	-1.1
2,580,714	+		SO_2461	0.16	-2.8
2,580,721	+		SO_2461	0.17	+0.2
2,580,745	-		SO_2461	0.21	-1.9
2,580,746	+		SO_2461	0.21	-0.7
2,580,746	+		SO_2461	0.21	-0.1
2,580,746	+		SO_2461	0.21	+0.1
2,580,754	-		SO_2461	0.22	-0.8
2,580,816	-		SO_2461	0.32	-0.1
2,580,900	+		SO_2461	0.45	-2.4
2,580,915	-		SO_2461	0.47	+0.8
2,580,917	+		SO_2461	0.47	+0.5
2,580,917	+		SO_2461	0.47	+0.0
2,580,923	+		SO_2461	0.48	-0.4
2,580,923	-		SO_2461	0.48	+0.5
2,580,925	-		SO_2461	0.49	-0.6
2,580,948	+		SO_2461	0.52	+0.5
2,580,949	-		SO_2461	0.52	-0.2