Strain Fitness in Shewanella oneidensis MR-1 around SO1543

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
1,618,940	+				+2.3
1,618,978	+				-0.3
1,619,011	+				-0.4
1,619,057	+		SO1543	0.11	+0.2
1,619,062	+		SO1543	0.12	+0.8
1,619,067	+		SO1543	0.13	-1.7
1,619,067	+		SO1543	0.13	-0.2
1,619,075	-		SO1543	0.14	-0.2
1,619,075	-		SO1543	0.14	+0.3
1,619,075	-		SO1543	0.14	-0.8
1,619,075	-		SO1543	0.14	-0.9
1,619,075	-		SO1543	0.14	-0.0
1,619,075	-		SO1543	0.14	-1.4
1,619,075	-		SO1543	0.14	-0.4
1,619,075	-		SO1543	0.14	+0.1
1,619,077	-		SO1543	0.14	+0.1
1,619,081	+		SO1543	0.14	-0.2
1,619,081	+		SO1543	0.14	-0.3
1,619,082	+		SO1543	0.15	-0.9
1,619,082	+		SO1543	0.15	-2.0
1,619,090	-		SO1543	0.16	+2.3
1,619,090	-		SO1543	0.16	+0.3
1,619,092	+		SO1543	0.16	-0.4
1,619,092	+		SO1543	0.16	+1.3
1,619,093	+		SO1543	0.16	+0.9
1,619,093	+		SO1543	0.16	+0.4
1,619,093	+		SO1543	0.16	+1.1
1,619,093	+		SO1543	0.16	-0.1
1,619,094	+		SO1543	0.16	-0.2
1,619,096	-		SO1543	0.16	+0.2
1,619,101	-		SO1543	0.17	-0.3
1,619,101	-		SO1543	0.17	-1.5
1,619,102	-		SO1543	0.17	+0.7
1,619,103	+		SO1543	0.17	+0.3
1,619,104	+		SO1543	0.17	-0.9
1,619,104	+		SO1543	0.17	+0.5
1,619,104	+		SO1543	0.17	-0.0
1,619,111	+		SO1543	0.18	-0.2
1,619,111	-		SO1543	0.18	-1.0
1,619,112	-		SO1543	0.18	-1.1
1,619,112	-		SO1543	0.18	-0.0
1,619,112	-		SO1543	0.18	-0.1
1,619,112	-		SO1543	0.18	-1.5
1,619,113	+		SO1543	0.19	-0.5
1,619,121	-		SO1543	0.20	+0.1
1,619,124	-		SO1543	0.20	-0.2
1,619,127	+		SO1543	0.20	+0.5
1,619,135	+		SO1543	0.21	+0.4
1,619,143	-		SO1543	0.22	-2.4
1,619,144	-		SO1543	0.22	+1.4
1,619,146	+		SO1543	0.23	-0.9
1,619,146	+		SO1543	0.23	-0.7
1,619,149	-		SO1543	0.23	+0.9
1,619,154	-		SO1543	0.24	+0.5
1,619,194	+		SO1543	0.29	+0.2
1,619,194	+		SO1543	0.29	+0.6
1,619,194	+		SO1543	0.29	-0.8
1,619,194	+		SO1543	0.29	-0.3
1,619,194	+		SO1543	0.29	-0.1
1,619,194	+		SO1543	0.29	-1.0
1,619,194	+		SO1543	0.29	+0.3
1,619,194	+		SO1543	0.29	-0.1
1,619,194	+		SO1543	0.29	+0.6
1,619,194	+		SO1543	0.29	+0.5
1,619,194	+		SO1543	0.29	-0.3
1,619,194	+		SO1543	0.29	-0.2
1,619,194	+		SO1543	0.29	+0.8
1,619,194	+		SO1543	0.29	-0.3
1,619,194	+		SO1543	0.29	-0.1
1,619,194	+		SO1543	0.29	-0.8
1,619,194	+		SO1543	0.29	+0.1
1,619,194	+		SO1543	0.29	-0.2
1,619,194	+		SO1543	0.29	-0.0
1,619,194	+		SO1543	0.29	-0.0
1,619,194	+		SO1543	0.29	+0.1
1,619,194	+		SO1543	0.29	-0.2
1,619,194	+		SO1543	0.29	-2.0
1,619,199	+		SO1543	0.29	+0.0
1,619,199	+		SO1543	0.29	-0.5
1,619,199	+		SO1543	0.29	+0.0
1,619,199	+		SO1543	0.29	-0.6
1,619,199	+		SO1543	0.29	-0.3
1,619,199	+		SO1543	0.29	+0.4
1,619,199	+		SO1543	0.29	-0.4
1,619,199	+		SO1543	0.29	-0.2
1,619,199	+		SO1543	0.29	-0.0
1,619,199	+		SO1543	0.29	+0.0
1,619,199	+		SO1543	0.29	-1.1
1,619,202	-		SO1543	0.30	-0.1
1,619,202	-				+0.3
1,619,202	-		SO1543	0.30	+0.2
1,619,202	-		SO1543	0.30	+0.4
1,619,202	-		SO1543	0.30	-0.7
1,619,202	-		SO1543	0.30	-0.8
1,619,202	-		SO1543	0.30	+0.1
1,619,202	-		SO1543	0.30	-0.4
1,619,202	-		SO1543	0.30	-0.2
1,619,202	-		SO1543	0.30	+1.3
1,619,202	-		SO1543	0.30	-0.0
1,619,202	-		SO1543	0.30	-1.1
1,619,202	-		SO1543	0.30	+0.3
1,619,202	-		SO1543	0.30	-0.1
1,619,202	-		SO1543	0.30	-0.1
1,619,202	-		SO1543	0.30	+2.6
1,619,202	-		SO1543	0.30	-0.2
1,619,202	-		SO1543	0.30	-0.4
1,619,202	-		SO1543	0.30	-0.4
1,619,202	-		SO1543	0.30	+1.1
1,619,202	-		SO1543	0.30	-0.7
1,619,202	-		SO1543	0.30	-1.5
1,619,202	-		SO1543	0.30	+0.2
1,619,202	-		SO1543	0.30	-0.4
1,619,202	-		SO1543	0.30	-1.0
1,619,202	-		SO1543	0.30	-0.8
1,619,202	-		SO1543	0.30	+0.9
1,619,202	-		SO1543	0.30	-2.3
1,619,202	-		SO1543	0.30	+0.6
1,619,202	-		SO1543	0.30	+0.6
1,619,207	-		SO1543	0.30	+0.2
1,619,207	-		SO1543	0.30	+0.5
1,619,207	-		SO1543	0.30	+0.3
1,619,207	-		SO1543	0.30	+1.8
1,619,209	+		SO1543	0.31	+0.0
1,619,217	-		SO1543	0.32	-0.6
1,619,217	-		SO1543	0.32	+0.3
1,619,217	-		SO1543	0.32	+0.6
1,619,217	-		SO1543	0.32	-0.7
1,619,250	+		SO1543	0.36	+0.1
1,619,258	-		SO1543	0.37	-1.8
1,619,285	+		SO1543	0.40	-1.7
1,619,307	+		SO1543	0.43	-1.2
1,619,322	-		SO1543	0.45	-0.3
1,619,339	-		SO1543	0.47	-0.7
1,619,369	+		SO1543	0.51	+0.4
1,619,388	-		SO1543	0.53	+0.1
1,619,389	+		SO1543	0.53	+0.5
1,619,452	+		SO1543	0.61	+0.2
1,619,455	-		SO1543	0.62	-0.1
1,619,455	-		SO1543	0.62	-0.6
1,619,475	-		SO1543	0.64	+0.3
1,619,501	+		SO1543	0.68	-0.0
1,619,509	-		SO1543	0.69	+1.1
1,619,509	-		SO1543	0.69	-0.0
1,619,509	-		SO1543	0.69	-1.8
1,619,511	-		SO1543	0.69	-0.5
1,619,511	-		SO1543	0.69	-0.1
1,619,514	+		SO1543	0.69	+0.9
1,619,522	-		SO1543	0.70	-1.9
1,619,533	+		SO1543	0.72	+0.2
1,619,533	+		SO1543	0.72	+0.5
1,619,533	+		SO1543	0.72	-1.2
1,619,533	-		SO1543	0.72	-1.7
1,619,535	+		SO1543	0.72	+0.5
1,619,535	+		SO1543	0.72	-0.3
1,619,535	+		SO1543	0.72	+0.6
1,619,542	-		SO1543	0.73	-1.5
1,619,543	-		SO1543	0.73	-0.2
1,619,543	-		SO1543	0.73	-0.3
1,619,543	-		SO1543	0.73	-0.1
1,619,544	+		SO1543	0.73	-2.2
1,619,546	+		SO1543	0.73	+0.9
1,619,581	+		SO1543	0.78	-1.2
1,619,581	+		SO1543	0.78	-0.0
1,619,584	+		SO1543	0.78	+0.8
1,619,589	-		SO1543	0.79	+0.1
1,619,589	-		SO1543	0.79	-0.2
1,619,589	-		SO1543	0.79	+0.2
1,619,592	-		SO1543	0.79	+0.6
1,619,592	-		SO1543	0.79	+0.3
1,619,592	-		SO1543	0.79	-0.3
1,619,640	-		SO1543	0.85	-0.9
1,619,652	-		SO1543	0.87	+0.6
1,619,657	+		SO1543	0.87	-1.0
1,619,658	+		SO1543	0.88	+0.6
1,619,659	-		SO1543	0.88	+0.6
1,619,660	+		SO1543	0.88	-0.1
1,619,665	-		SO1543	0.88	+0.5
1,619,665	-		SO1543	0.88	-0.2
1,619,668	-		SO1543	0.89	-0.4
1,619,690	-				-0.1
1,619,692	+				+0.2
1,619,700	-				+0.8
1,619,710	-				+0.4
1,619,757	+				-0.5
1,619,759	+				-0.9
1,619,772	+				-0.9
1,619,780	-				-0.2
1,619,780	-				-0.1
1,619,847	+				+1.4
1,619,847	+				-0.1
1,619,857	+				-1.4
1,619,857	+				+1.9
1,619,857	+				-0.9
1,619,857	+				+0.3
1,619,857	+				-0.1
1,619,865	-				+0.8
1,619,865	-				-0.5
1,619,865	-				-0.2
1,619,865	-				+0.1
1,619,865	-				-0.7
1,619,865	-				-0.1
1,619,865	-				-0.7
1,619,905	+				+0.7
1,619,906	-				+0.0
1,619,913	+				-1.0
1,619,913	+				-0.4
1,619,915	-				+1.2
1,619,921	-				-0.3
1,619,970	-				+0.0
1,619,980	-				-0.7
1,619,980	-				+0.8
1,619,983	-				-0.3
1,619,993	-				+0.3
1,620,007	+				+1.2
1,620,171	-				-0.1
1,620,271	+				-0.4
1,620,284	-				+0.7
1,620,284	-				+1.3
1,620,506	-		SO1546	0.12	-0.2
1,620,645	-		SO1546	0.26	+0.5
1,620,665	-		SO1546	0.28	+0.1
1,620,677	-		SO1546	0.29	+0.0