Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaD and SO0936 are separated by 165 nucleotides SO0936 and SO0937 are separated by 1 nucleotides SO0937 and SO0938 are separated by 66 nucleotides
SO0935: nhaD - Na+/H+ antiporter (NCBI ptt file), at 966,474 to 967,904
nhaD
SO0936: SO0936 - transcriptional regulator (NCBI ptt file), at 968,070 to 968,816
SO0936
SO0937: SO0937 - hypothetical protein (NCBI ptt file), at 968,818 to 969,357
SO0937
SO0938: SO0938 - hypothetical protein (NCBI ptt file), at 969,424 to 969,951
SO0938
Position (kb) 968
969 Strain fitness (log2 ratio) -1
0
1 at 967.120 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.233 kb on - strand, within nhaD at 967.276 kb on + strand, within nhaD at 967.328 kb on + strand, within nhaD at 967.370 kb on + strand, within nhaD at 967.378 kb on - strand, within nhaD at 967.411 kb on + strand, within nhaD at 967.458 kb on + strand, within nhaD at 967.464 kb on - strand, within nhaD at 967.586 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.612 kb on + strand, within nhaD at 967.616 kb on - strand, within nhaD at 967.637 kb on - strand, within nhaD at 967.695 kb on - strand, within nhaD at 967.698 kb on + strand, within nhaD at 967.850 kb on + strand at 967.858 kb on - strand at 967.989 kb on + strand at 968.011 kb on + strand at 968.040 kb on + strand at 968.239 kb on - strand, within SO0936 at 968.257 kb on - strand, within SO0936 at 968.324 kb on + strand, within SO0936 at 968.398 kb on + strand, within SO0936 at 968.532 kb on + strand, within SO0936 at 968.573 kb on + strand, within SO0936 at 968.576 kb on - strand, within SO0936 at 968.674 kb on - strand, within SO0936 at 968.847 kb on + strand at 969.079 kb on - strand, within SO0937 at 969.079 kb on - strand, within SO0937 at 969.129 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.307 kb on - strand at 969.361 kb on + strand at 969.369 kb on - strand at 969.424 kb on + strand at 969.430 kb on - strand at 969.449 kb on - strand at 969.481 kb on - strand, within SO0938 at 969.521 kb on + strand, within SO0938 at 969.529 kb on - strand, within SO0938 at 969.578 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.595 kb on + strand, within SO0938 at 969.602 kb on + strand, within SO0938 at 969.603 kb on - strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.797 kb on + strand, within SO0938
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 967,120 + nhaD SO0935 0.45 +0.2 967,130 + nhaD SO0935 0.46 +0.9 967,130 + nhaD SO0935 0.46 +0.9 967,233 - nhaD SO0935 0.53 +0.5 967,276 + nhaD SO0935 0.56 -1.6 967,328 + nhaD SO0935 0.60 +0.3 967,370 + nhaD SO0935 0.63 -0.8 967,378 - nhaD SO0935 0.63 -0.2 967,411 + nhaD SO0935 0.65 -0.7 967,458 + nhaD SO0935 0.69 -0.2 967,464 - nhaD SO0935 0.69 -0.1 967,586 + nhaD SO0935 0.78 -0.6 967,608 + nhaD SO0935 0.79 -1.7 967,608 + nhaD SO0935 0.79 -0.3 967,612 + nhaD SO0935 0.80 -0.1 967,616 - nhaD SO0935 0.80 -0.7 967,637 - nhaD SO0935 0.81 -0.1 967,695 - nhaD SO0935 0.85 +0.7 967,698 + nhaD SO0935 0.86 -1.2 967,850 + +0.1 967,858 - -0.4 967,989 + +1.0 968,011 + +1.2 968,040 + -1.7 968,239 - SO0936 0.23 +0.1 968,257 - SO0936 0.25 +0.4 968,324 + SO0936 0.34 -0.4 968,398 + SO0936 0.44 -1.1 968,532 + SO0936 0.62 -1.3 968,573 + SO0936 0.67 -1.2 968,576 - SO0936 0.68 +0.1 968,674 - SO0936 0.81 -0.4 968,847 + -0.1 969,079 - SO0937 0.48 +0.8 969,079 - SO0937 0.48 -1.2 969,129 + SO0937 0.58 +1.4 969,299 + SO0937 0.89 -0.0 969,299 + SO0937 0.89 -0.9 969,307 - +0.2 969,361 + -0.0 969,369 - +0.7 969,424 + -1.3 969,430 - +0.4 969,449 - +0.9 969,481 - SO0938 0.11 +0.7 969,521 + SO0938 0.18 +1.0 969,529 - SO0938 0.20 -0.0 969,578 + SO0938 0.29 -0.0 969,585 + SO0938 0.30 +0.3 969,585 + SO0938 0.30 -0.7 969,595 + SO0938 0.32 -0.5 969,602 + SO0938 0.34 -0.1 969,603 - SO0938 0.34 +0.2 969,643 + SO0938 0.41 +0.0 969,643 + SO0938 0.41 +0.1 969,797 + SO0938 0.71 -0.4
Or see this region's nucleotide sequence