Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0934 and nhaD are separated by 279 nucleotides nhaD and SO0936 are separated by 165 nucleotides SO0936 and SO0937 are separated by 1 nucleotides
SO0934: SO0934 - conserved hypothetical protein (NCBI ptt file), at 965,457 to 966,194
SO0934
SO0935: nhaD - Na+/H+ antiporter (NCBI ptt file), at 966,474 to 967,904
nhaD
SO0936: SO0936 - transcriptional regulator (NCBI ptt file), at 968,070 to 968,816
SO0936
SO0937: SO0937 - hypothetical protein (NCBI ptt file), at 968,818 to 969,357
SO0937
Position (kb) 966
967
968 Strain fitness (log2 ratio) -1
0
1 at 965.483 kb on + strand at 965.491 kb on - strand at 965.594 kb on + strand, within SO0934 at 965.705 kb on + strand, within SO0934 at 965.705 kb on + strand, within SO0934 at 965.705 kb on + strand, within SO0934 at 965.760 kb on - strand, within SO0934 at 965.796 kb on - strand, within SO0934 at 965.826 kb on + strand, within SO0934 at 965.826 kb on + strand, within SO0934 at 965.841 kb on - strand, within SO0934 at 965.841 kb on - strand, within SO0934 at 965.849 kb on - strand, within SO0934 at 966.175 kb on - strand at 966.541 kb on + strand at 966.565 kb on + strand at 966.617 kb on + strand, within nhaD at 966.803 kb on - strand, within nhaD at 966.861 kb on - strand, within nhaD at 966.876 kb on - strand, within nhaD at 966.946 kb on - strand, within nhaD at 966.964 kb on - strand, within nhaD at 967.120 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.233 kb on - strand, within nhaD at 967.276 kb on + strand, within nhaD at 967.328 kb on + strand, within nhaD at 967.370 kb on + strand, within nhaD at 967.378 kb on - strand, within nhaD at 967.411 kb on + strand, within nhaD at 967.458 kb on + strand, within nhaD at 967.464 kb on - strand, within nhaD at 967.586 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.612 kb on + strand, within nhaD at 967.616 kb on - strand, within nhaD at 967.637 kb on - strand, within nhaD at 967.695 kb on - strand, within nhaD at 967.698 kb on + strand, within nhaD at 967.850 kb on + strand at 967.858 kb on - strand at 967.989 kb on + strand at 968.011 kb on + strand at 968.040 kb on + strand at 968.239 kb on - strand, within SO0936 at 968.257 kb on - strand, within SO0936 at 968.324 kb on + strand, within SO0936 at 968.398 kb on + strand, within SO0936 at 968.532 kb on + strand, within SO0936 at 968.573 kb on + strand, within SO0936 at 968.576 kb on - strand, within SO0936 at 968.674 kb on - strand, within SO0936 at 968.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 965,483 + -0.4 965,491 - +0.6 965,594 + SO0934 0.19 +1.2 965,705 + SO0934 0.34 +1.0 965,705 + SO0934 0.34 +0.1 965,705 + SO0934 0.34 -0.4 965,760 - SO0934 0.41 -0.5 965,796 - SO0934 0.46 -0.2 965,826 + SO0934 0.50 -0.4 965,826 + SO0934 0.50 +0.4 965,841 - SO0934 0.52 +0.5 965,841 - SO0934 0.52 -0.7 965,849 - SO0934 0.53 +1.4 966,175 - +0.9 966,541 + -0.3 966,565 + -0.5 966,617 + nhaD SO0935 0.10 -0.3 966,803 - nhaD SO0935 0.23 -0.7 966,861 - nhaD SO0935 0.27 +0.1 966,876 - nhaD SO0935 0.28 +0.6 966,946 - nhaD SO0935 0.33 +0.1 966,964 - nhaD SO0935 0.34 +1.4 967,120 + nhaD SO0935 0.45 +0.2 967,130 + nhaD SO0935 0.46 +0.9 967,130 + nhaD SO0935 0.46 +0.9 967,233 - nhaD SO0935 0.53 +0.5 967,276 + nhaD SO0935 0.56 -1.6 967,328 + nhaD SO0935 0.60 +0.3 967,370 + nhaD SO0935 0.63 -0.8 967,378 - nhaD SO0935 0.63 -0.2 967,411 + nhaD SO0935 0.65 -0.7 967,458 + nhaD SO0935 0.69 -0.2 967,464 - nhaD SO0935 0.69 -0.1 967,586 + nhaD SO0935 0.78 -0.6 967,608 + nhaD SO0935 0.79 -1.7 967,608 + nhaD SO0935 0.79 -0.3 967,612 + nhaD SO0935 0.80 -0.1 967,616 - nhaD SO0935 0.80 -0.7 967,637 - nhaD SO0935 0.81 -0.1 967,695 - nhaD SO0935 0.85 +0.7 967,698 + nhaD SO0935 0.86 -1.2 967,850 + +0.1 967,858 - -0.4 967,989 + +1.0 968,011 + +1.2 968,040 + -1.7 968,239 - SO0936 0.23 +0.1 968,257 - SO0936 0.25 +0.4 968,324 + SO0936 0.34 -0.4 968,398 + SO0936 0.44 -1.1 968,532 + SO0936 0.62 -1.3 968,573 + SO0936 0.67 -1.2 968,576 - SO0936 0.68 +0.1 968,674 - SO0936 0.81 -0.4 968,847 + -0.1
Or see this region's nucleotide sequence