Strain Fitness in Shewanella oneidensis MR-1 around SO0525

Experiment: SBM - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0524 and SO0525 are separated by 1 nucleotidesSO0525 and SO0526 are separated by 138 nucleotidesSO0526 and SO0527 are separated by 43 nucleotides SO0524: SO0524 - HlyD family secretion protein (NCBI ptt file), at 547,338 to 548,243 SO0524 SO0525: SO0525 - drug resistance transporter, EmrB/QacA family protein (NCBI ptt file), at 548,245 to 549,864 SO0525 SO0526: SO0526 - acetyltransferase, GNAT family (NCBI ptt file), at 550,003 to 550,476 SO0526 SO0527: SO0527 - conserved hypothetical protein (NCBI ptt file), at 550,520 to 550,846 SO0527 Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1 2at 547.251 kb on + strandat 547.357 kb on + strandat 547.409 kb on + strandat 547.479 kb on + strand, within SO0524at 547.479 kb on + strand, within SO0524at 547.487 kb on - strand, within SO0524at 547.503 kb on + strand, within SO0524at 547.524 kb on + strand, within SO0524at 547.565 kb on + strand, within SO0524at 547.570 kb on + strand, within SO0524at 547.578 kb on - strand, within SO0524at 547.581 kb on + strand, within SO0524at 547.608 kb on - strand, within SO0524at 547.623 kb on + strand, within SO0524at 547.693 kb on - strand, within SO0524at 547.747 kb on - strand, within SO0524at 547.777 kb on - strand, within SO0524at 547.814 kb on - strand, within SO0524at 547.885 kb on + strand, within SO0524at 547.890 kb on + strand, within SO0524at 547.890 kb on + strand, within SO0524at 547.898 kb on - strand, within SO0524at 547.898 kb on - strand, within SO0524at 547.910 kb on + strand, within SO0524at 547.910 kb on + strand, within SO0524at 547.920 kb on + strand, within SO0524at 547.928 kb on - strand, within SO0524at 547.980 kb on + strand, within SO0524at 547.980 kb on + strand, within SO0524at 547.985 kb on + strand, within SO0524at 547.993 kb on - strand, within SO0524at 547.993 kb on - strand, within SO0524at 548.039 kb on + strand, within SO0524at 548.159 kb on + strandat 548.178 kb on - strandat 548.178 kb on - strandat 548.183 kb on + strandat 548.189 kb on + strandat 548.191 kb on - strandat 548.247 kb on - strandat 548.247 kb on - strandat 548.309 kb on + strandat 548.309 kb on + strandat 548.369 kb on + strandat 548.429 kb on + strand, within SO0525at 548.519 kb on + strand, within SO0525at 548.519 kb on + strand, within SO0525at 548.519 kb on + strand, within SO0525at 548.527 kb on - strand, within SO0525at 548.527 kb on - strand, within SO0525at 548.527 kb on - strand, within SO0525at 548.527 kb on - strand, within SO0525at 548.527 kb on - strand, within SO0525at 548.558 kb on - strand, within SO0525at 548.596 kb on - strand, within SO0525at 548.661 kb on - strand, within SO0525at 548.744 kb on + strand, within SO0525at 548.764 kb on - strand, within SO0525at 548.767 kb on + strand, within SO0525at 548.775 kb on - strand, within SO0525at 548.775 kb on - strand, within SO0525at 548.903 kb on + strand, within SO0525at 548.911 kb on - strand, within SO0525at 548.948 kb on + strand, within SO0525at 548.956 kb on - strand, within SO0525at 548.956 kb on - strand, within SO0525at 548.956 kb on - strand, within SO0525at 548.961 kb on + strand, within SO0525at 548.963 kb on - strand, within SO0525at 548.968 kb on - strand, within SO0525at 548.993 kb on + strand, within SO0525at 549.237 kb on - strand, within SO0525at 549.237 kb on - strand, within SO0525at 549.337 kb on + strand, within SO0525at 549.416 kb on + strand, within SO0525at 549.416 kb on + strand, within SO0525at 549.416 kb on + strand, within SO0525at 549.416 kb on + strand, within SO0525at 549.424 kb on - strand, within SO0525at 549.424 kb on - strand, within SO0525at 549.583 kb on + strand, within SO0525at 549.583 kb on + strand, within SO0525at 549.591 kb on - strand, within SO0525at 549.603 kb on + strand, within SO0525at 549.638 kb on + strand, within SO0525at 549.646 kb on - strand, within SO0525at 549.646 kb on - strand, within SO0525at 549.681 kb on + strand, within SO0525at 549.702 kb on + strand, within SO0525at 549.710 kb on - strandat 549.746 kb on - strandat 549.826 kb on + strandat 549.826 kb on + strandat 549.826 kb on + strandat 549.826 kb on + strandat 549.834 kb on - strandat 549.834 kb on - strandat 549.834 kb on - strandat 549.865 kb on + strandat 549.895 kb on + strandat 549.949 kb on + strandat 549.959 kb on + strandat 549.967 kb on - strandat 549.981 kb on - strandat 550.108 kb on + strand, within SO0526at 550.113 kb on + strand, within SO0526at 550.116 kb on - strand, within SO0526at 550.121 kb on - strand, within SO0526at 550.121 kb on - strand, within SO0526at 550.121 kb on - strand, within SO0526at 550.238 kb on - strand, within SO0526at 550.243 kb on - strand, within SO0526at 550.263 kb on + strand, within SO0526at 550.301 kb on + strand, within SO0526at 550.309 kb on - strand, within SO0526at 550.423 kb on - strand, within SO0526at 550.423 kb on - strand, within SO0526at 550.423 kb on - strand, within SO0526at 550.430 kb on - strandat 550.456 kb on - strandat 550.461 kb on + strandat 550.664 kb on - strand, within SO0527at 550.737 kb on + strand, within SO0527at 550.745 kb on - strand, within SO0527

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Per-strain Table

Position Strand Gene LocusTag Fraction SBM - with RNA protect
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547,251 + +0.4
547,357 + +0.5
547,409 + +0.5
547,479 + SO0524 0.16 +0.4
547,479 + SO0524 0.16 +0.0
547,487 - SO0524 0.16 +0.2
547,503 + SO0524 0.18 -1.0
547,524 + SO0524 0.21 +0.7
547,565 + SO0524 0.25 -0.4
547,570 + SO0524 0.26 +0.7
547,578 - SO0524 0.26 +0.2
547,581 + SO0524 0.27 -0.1
547,608 - SO0524 0.30 -0.9
547,623 + SO0524 0.31 +0.8
547,693 - SO0524 0.39 +0.1
547,747 - SO0524 0.45 -1.0
547,777 - SO0524 0.48 +0.7
547,814 - SO0524 0.53 +0.3
547,885 + SO0524 0.60 +0.4
547,890 + SO0524 0.61 -0.5
547,890 + SO0524 0.61 -2.0
547,898 - SO0524 0.62 -1.5
547,898 - SO0524 0.62 +0.4
547,910 + SO0524 0.63 +1.3
547,910 + SO0524 0.63 +0.5
547,920 + SO0524 0.64 -0.0
547,928 - SO0524 0.65 -2.0
547,980 + SO0524 0.71 +0.6
547,980 + SO0524 0.71 +0.3
547,985 + SO0524 0.71 +0.4
547,993 - SO0524 0.72 -0.0
547,993 - SO0524 0.72 -0.2
548,039 + SO0524 0.77 -0.5
548,159 + -0.1
548,178 - -0.1
548,178 - +0.1
548,183 + +0.5
548,189 + -0.4
548,191 - +1.5
548,247 - +0.0
548,247 - +0.2
548,309 + +0.1
548,309 + -0.7
548,369 + +0.5
548,429 + SO0525 0.11 +0.1
548,519 + SO0525 0.17 +1.0
548,519 + SO0525 0.17 +0.1
548,519 + SO0525 0.17 +1.3
548,527 - SO0525 0.17 +0.5
548,527 - SO0525 0.17 +0.1
548,527 - SO0525 0.17 +0.8
548,527 - SO0525 0.17 +1.0
548,527 - SO0525 0.17 +0.5
548,558 - SO0525 0.19 +0.2
548,596 - SO0525 0.22 -0.8
548,661 - SO0525 0.26 +0.5
548,744 + SO0525 0.31 +0.3
548,764 - SO0525 0.32 -0.4
548,767 + SO0525 0.32 -0.3
548,775 - SO0525 0.33 +0.7
548,775 - SO0525 0.33 +1.9
548,903 + SO0525 0.41 -1.3
548,911 - SO0525 0.41 +1.0
548,948 + SO0525 0.43 -0.2
548,956 - SO0525 0.44 +0.9
548,956 - SO0525 0.44 -0.6
548,956 - SO0525 0.44 +0.7
548,961 + SO0525 0.44 +0.7
548,963 - SO0525 0.44 +0.8
548,968 - SO0525 0.45 +1.6
548,993 + SO0525 0.46 +0.2
549,237 - SO0525 0.61 +0.7
549,237 - SO0525 0.61 +0.1
549,337 + SO0525 0.67 +2.5
549,416 + SO0525 0.72 +2.5
549,416 + SO0525 0.72 -2.0
549,416 + SO0525 0.72 -1.1
549,416 + SO0525 0.72 +1.0
549,424 - SO0525 0.73 +0.5
549,424 - SO0525 0.73 -0.5
549,583 + SO0525 0.83 -0.4
549,583 + SO0525 0.83 +0.8
549,591 - SO0525 0.83 -1.8
549,603 + SO0525 0.84 +0.7
549,638 + SO0525 0.86 +0.0
549,646 - SO0525 0.86 +0.1
549,646 - SO0525 0.86 +0.2
549,681 + SO0525 0.89 +0.7
549,702 + SO0525 0.90 +1.5
549,710 - -0.1
549,746 - -0.7
549,826 + -0.3
549,826 + +0.5
549,826 + +1.5
549,826 + +0.5
549,834 - +0.5
549,834 - -0.7
549,834 - +0.3
549,865 + +0.6
549,895 + -0.0
549,949 + +0.2
549,959 + -0.5
549,967 - -0.2
549,981 - -0.0
550,108 + SO0526 0.22 +0.4
550,113 + SO0526 0.23 -0.1
550,116 - SO0526 0.24 -0.4
550,121 - SO0526 0.25 -1.3
550,121 - SO0526 0.25 -0.3
550,121 - SO0526 0.25 +0.1
550,238 - SO0526 0.50 +0.7
550,243 - SO0526 0.51 +0.2
550,263 + SO0526 0.55 -0.1
550,301 + SO0526 0.63 -0.8
550,309 - SO0526 0.65 -1.4
550,423 - SO0526 0.89 +0.7
550,423 - SO0526 0.89 +0.8
550,423 - SO0526 0.89 +0.2
550,430 - -0.2
550,456 - +0.3
550,461 + +1.0
550,664 - SO0527 0.44 +1.5
550,737 + SO0527 0.66 -0.4
550,745 - SO0527 0.69 +0.6

Or see this region's nucleotide sequence