Experiment: BG11 with Chloride 0.48828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_2562 and Synpcc7942_2563 are separated by 46 nucleotides Synpcc7942_2563 and accB overlap by 35 nucleotides accB and efp are separated by 41 nucleotides
Synpcc7942_2562: Synpcc7942_2562 - aluminum resistance protein-like, at 2,640,073 to 2,641,302
_2562
Synpcc7942_2563: Synpcc7942_2563 - exonuclease SbcC, at 2,641,349 to 2,644,351
_2563
Synpcc7942_2564: accB - biotin carboxyl carrier protein, at 2,644,317 to 2,644,793
accB
Synpcc7942_2565: efp - elongation factor P, at 2,644,835 to 2,645,392
efp
Position (kb)
2641
2642
2643
2644
2645 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2640.405 kb on - strand, within Synpcc7942_2562 at 2640.405 kb on - strand, within Synpcc7942_2562 at 2640.434 kb on + strand, within Synpcc7942_2562 at 2640.476 kb on - strand, within Synpcc7942_2562 at 2640.577 kb on - strand, within Synpcc7942_2562 at 2640.581 kb on - strand, within Synpcc7942_2562 at 2640.664 kb on + strand, within Synpcc7942_2562 at 2640.807 kb on - strand, within Synpcc7942_2562 at 2640.893 kb on - strand, within Synpcc7942_2562 at 2640.897 kb on + strand, within Synpcc7942_2562 at 2640.897 kb on + strand, within Synpcc7942_2562 at 2640.905 kb on - strand, within Synpcc7942_2562 at 2640.907 kb on + strand, within Synpcc7942_2562 at 2640.917 kb on - strand, within Synpcc7942_2562 at 2640.918 kb on + strand, within Synpcc7942_2562 at 2641.014 kb on + strand, within Synpcc7942_2562 at 2641.035 kb on - strand, within Synpcc7942_2562 at 2641.222 kb on + strand at 2641.255 kb on - strand at 2641.305 kb on - strand at 2641.312 kb on + strand at 2641.322 kb on + strand at 2641.325 kb on - strand at 2641.327 kb on + strand at 2641.330 kb on - strand at 2641.360 kb on - strand at 2641.370 kb on - strand at 2641.500 kb on - strand at 2641.515 kb on + strand at 2641.526 kb on + strand at 2641.526 kb on + strand at 2641.526 kb on + strand at 2641.534 kb on - strand at 2641.534 kb on - strand at 2641.553 kb on - strand at 2641.600 kb on - strand at 2641.627 kb on + strand at 2641.636 kb on - strand at 2641.655 kb on + strand, within Synpcc7942_2563 at 2641.658 kb on - strand, within Synpcc7942_2563 at 2641.660 kb on + strand, within Synpcc7942_2563 at 2641.660 kb on + strand, within Synpcc7942_2563 at 2641.666 kb on + strand, within Synpcc7942_2563 at 2641.673 kb on - strand, within Synpcc7942_2563 at 2641.723 kb on + strand, within Synpcc7942_2563 at 2641.726 kb on - strand, within Synpcc7942_2563 at 2641.729 kb on + strand, within Synpcc7942_2563 at 2641.741 kb on + strand, within Synpcc7942_2563 at 2641.831 kb on + strand, within Synpcc7942_2563 at 2641.852 kb on + strand, within Synpcc7942_2563 at 2641.853 kb on + strand, within Synpcc7942_2563 at 2641.853 kb on + strand, within Synpcc7942_2563 at 2641.853 kb on + strand, within Synpcc7942_2563 at 2641.853 kb on + strand, within Synpcc7942_2563 at 2641.853 kb on + strand, within Synpcc7942_2563 at 2641.855 kb on - strand at 2641.861 kb on - strand, within Synpcc7942_2563 at 2641.894 kb on + strand, within Synpcc7942_2563 at 2641.894 kb on + strand, within Synpcc7942_2563 at 2641.902 kb on - strand, within Synpcc7942_2563 at 2641.909 kb on + strand, within Synpcc7942_2563 at 2641.917 kb on - strand, within Synpcc7942_2563 at 2641.929 kb on + strand, within Synpcc7942_2563 at 2641.941 kb on + strand, within Synpcc7942_2563 at 2641.955 kb on + strand, within Synpcc7942_2563 at 2641.964 kb on + strand, within Synpcc7942_2563 at 2641.966 kb on - strand, within Synpcc7942_2563 at 2642.003 kb on + strand, within Synpcc7942_2563 at 2642.028 kb on + strand, within Synpcc7942_2563 at 2642.043 kb on + strand, within Synpcc7942_2563 at 2642.043 kb on + strand, within Synpcc7942_2563 at 2642.043 kb on + strand, within Synpcc7942_2563 at 2642.051 kb on - strand, within Synpcc7942_2563 at 2642.051 kb on - strand, within Synpcc7942_2563 at 2642.051 kb on - strand, within Synpcc7942_2563 at 2642.087 kb on + strand, within Synpcc7942_2563 at 2642.093 kb on + strand, within Synpcc7942_2563 at 2642.136 kb on - strand, within Synpcc7942_2563 at 2642.173 kb on + strand, within Synpcc7942_2563 at 2642.181 kb on - strand, within Synpcc7942_2563 at 2642.251 kb on + strand, within Synpcc7942_2563 at 2642.253 kb on - strand, within Synpcc7942_2563 at 2642.265 kb on - strand, within Synpcc7942_2563 at 2642.311 kb on + strand, within Synpcc7942_2563 at 2642.318 kb on + strand, within Synpcc7942_2563 at 2642.326 kb on - strand, within Synpcc7942_2563 at 2642.331 kb on - strand, within Synpcc7942_2563 at 2642.377 kb on + strand at 2642.385 kb on - strand, within Synpcc7942_2563 at 2642.387 kb on + strand, within Synpcc7942_2563 at 2642.397 kb on + strand, within Synpcc7942_2563 at 2642.415 kb on - strand, within Synpcc7942_2563 at 2642.485 kb on - strand, within Synpcc7942_2563 at 2642.510 kb on + strand, within Synpcc7942_2563 at 2642.609 kb on - strand, within Synpcc7942_2563 at 2642.664 kb on + strand, within Synpcc7942_2563 at 2642.664 kb on + strand, within Synpcc7942_2563 at 2642.672 kb on - strand, within Synpcc7942_2563 at 2642.693 kb on - strand, within Synpcc7942_2563 at 2642.695 kb on + strand, within Synpcc7942_2563 at 2642.701 kb on + strand, within Synpcc7942_2563 at 2642.709 kb on - strand, within Synpcc7942_2563 at 2642.776 kb on + strand, within Synpcc7942_2563 at 2642.781 kb on + strand, within Synpcc7942_2563 at 2642.781 kb on + strand, within Synpcc7942_2563 at 2642.807 kb on + strand, within Synpcc7942_2563 at 2642.815 kb on - strand, within Synpcc7942_2563 at 2642.835 kb on + strand, within Synpcc7942_2563 at 2642.838 kb on - strand, within Synpcc7942_2563 at 2642.841 kb on - strand, within Synpcc7942_2563 at 2642.846 kb on - strand, within Synpcc7942_2563 at 2642.860 kb on + strand, within Synpcc7942_2563 at 2642.941 kb on - strand, within Synpcc7942_2563 at 2643.020 kb on - strand, within Synpcc7942_2563 at 2643.022 kb on + strand, within Synpcc7942_2563 at 2643.029 kb on - strand, within Synpcc7942_2563 at 2643.123 kb on + strand, within Synpcc7942_2563 at 2643.246 kb on + strand at 2643.282 kb on - strand, within Synpcc7942_2563 at 2643.296 kb on + strand at 2643.296 kb on + strand, within Synpcc7942_2563 at 2643.296 kb on + strand, within Synpcc7942_2563 at 2643.304 kb on - strand, within Synpcc7942_2563 at 2643.304 kb on - strand, within Synpcc7942_2563 at 2643.320 kb on + strand, within Synpcc7942_2563 at 2643.328 kb on - strand, within Synpcc7942_2563 at 2643.368 kb on + strand, within Synpcc7942_2563 at 2643.368 kb on + strand, within Synpcc7942_2563 at 2643.380 kb on + strand, within Synpcc7942_2563 at 2643.388 kb on - strand, within Synpcc7942_2563 at 2643.398 kb on + strand, within Synpcc7942_2563 at 2643.401 kb on - strand, within Synpcc7942_2563 at 2643.436 kb on + strand, within Synpcc7942_2563 at 2643.450 kb on - strand, within Synpcc7942_2563 at 2643.490 kb on - strand, within Synpcc7942_2563 at 2643.503 kb on - strand, within Synpcc7942_2563 at 2643.513 kb on - strand, within Synpcc7942_2563 at 2643.517 kb on + strand, within Synpcc7942_2563 at 2643.535 kb on - strand, within Synpcc7942_2563 at 2643.540 kb on - strand, within Synpcc7942_2563 at 2643.540 kb on - strand, within Synpcc7942_2563 at 2643.634 kb on - strand, within Synpcc7942_2563 at 2643.676 kb on - strand, within Synpcc7942_2563 at 2643.683 kb on + strand, within Synpcc7942_2563 at 2643.683 kb on + strand, within Synpcc7942_2563 at 2643.688 kb on + strand, within Synpcc7942_2563 at 2643.688 kb on + strand, within Synpcc7942_2563 at 2643.688 kb on + strand, within Synpcc7942_2563 at 2643.715 kb on - strand, within Synpcc7942_2563 at 2643.720 kb on - strand, within Synpcc7942_2563 at 2643.724 kb on - strand, within Synpcc7942_2563 at 2643.756 kb on + strand, within Synpcc7942_2563 at 2643.764 kb on - strand, within Synpcc7942_2563 at 2643.764 kb on - strand, within Synpcc7942_2563 at 2643.816 kb on - strand, within Synpcc7942_2563 at 2643.818 kb on + strand at 2643.900 kb on + strand, within Synpcc7942_2563 at 2643.908 kb on - strand, within Synpcc7942_2563 at 2643.919 kb on + strand, within Synpcc7942_2563 at 2643.923 kb on - strand, within Synpcc7942_2563 at 2643.927 kb on - strand, within Synpcc7942_2563 at 2643.947 kb on - strand, within Synpcc7942_2563 at 2643.966 kb on - strand, within Synpcc7942_2563 at 2644.003 kb on - strand, within Synpcc7942_2563 at 2644.009 kb on + strand, within Synpcc7942_2563 at 2644.017 kb on - strand, within Synpcc7942_2563 at 2644.037 kb on + strand, within Synpcc7942_2563 at 2644.037 kb on + strand, within Synpcc7942_2563 at 2644.037 kb on + strand, within Synpcc7942_2563 at 2644.042 kb on + strand, within Synpcc7942_2563 at 2644.042 kb on + strand, within Synpcc7942_2563 at 2644.045 kb on - strand, within Synpcc7942_2563 at 2644.045 kb on - strand, within Synpcc7942_2563 at 2644.045 kb on - strand, within Synpcc7942_2563 at 2644.085 kb on + strand at 2644.092 kb on + strand at 2644.093 kb on - strand at 2644.095 kb on - strand at 2644.100 kb on - strand at 2644.100 kb on - strand at 2644.110 kb on - strand at 2644.223 kb on + strand at 2644.278 kb on - strand at 2644.283 kb on + strand at 2644.283 kb on + strand at 2644.301 kb on - strand at 2644.306 kb on + strand at 2644.309 kb on - strand at 2644.795 kb on + strand at 2644.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM remove 2,640,405 - Synpcc7942_2562 0.27 -0.7 2,640,405 - Synpcc7942_2562 0.27 +0.7 2,640,434 + Synpcc7942_2562 0.29 +0.7 2,640,476 - Synpcc7942_2562 0.33 +2.6 2,640,577 - Synpcc7942_2562 0.41 -1.0 2,640,581 - Synpcc7942_2562 0.41 -0.8 2,640,664 + Synpcc7942_2562 0.48 -0.3 2,640,807 - Synpcc7942_2562 0.60 -1.2 2,640,893 - Synpcc7942_2562 0.67 -0.8 2,640,897 + Synpcc7942_2562 0.67 +1.3 2,640,897 + Synpcc7942_2562 0.67 -0.3 2,640,905 - Synpcc7942_2562 0.68 -0.7 2,640,907 + Synpcc7942_2562 0.68 +2.5 2,640,917 - Synpcc7942_2562 0.69 -0.3 2,640,918 + Synpcc7942_2562 0.69 +0.3 2,641,014 + Synpcc7942_2562 0.77 +0.5 2,641,035 - Synpcc7942_2562 0.78 +1.3 2,641,222 + +0.7 2,641,255 - -0.3 2,641,305 - -0.9 2,641,312 + +1.9 2,641,322 + -2.3 2,641,325 - -1.0 2,641,327 + -0.0 2,641,330 - -1.7 2,641,360 - -0.4 2,641,370 - +1.4 2,641,500 - -1.6 2,641,515 + -1.8 2,641,526 + -3.4 2,641,526 + -0.7 2,641,526 + -1.9 2,641,534 - -0.0 2,641,534 - -0.5 2,641,553 - -0.1 2,641,600 - -2.8 2,641,627 + -1.1 2,641,636 - +0.6 2,641,655 + Synpcc7942_2563 0.10 -0.8 2,641,658 - Synpcc7942_2563 0.10 -0.7 2,641,660 + Synpcc7942_2563 0.10 -0.4 2,641,660 + Synpcc7942_2563 0.10 -1.8 2,641,666 + Synpcc7942_2563 0.11 -1.8 2,641,673 - Synpcc7942_2563 0.11 -1.4 2,641,723 + Synpcc7942_2563 0.12 -1.3 2,641,726 - Synpcc7942_2563 0.13 -0.5 2,641,729 + Synpcc7942_2563 0.13 -0.1 2,641,741 + Synpcc7942_2563 0.13 -1.5 2,641,831 + Synpcc7942_2563 0.16 -0.5 2,641,852 + Synpcc7942_2563 0.17 -1.3 2,641,853 + Synpcc7942_2563 0.17 -1.2 2,641,853 + Synpcc7942_2563 0.17 -3.2 2,641,853 + Synpcc7942_2563 0.17 +0.5 2,641,853 + Synpcc7942_2563 0.17 -1.1 2,641,853 + Synpcc7942_2563 0.17 -1.8 2,641,855 - +2.5 2,641,861 - Synpcc7942_2563 0.17 +0.1 2,641,894 + Synpcc7942_2563 0.18 -0.0 2,641,894 + Synpcc7942_2563 0.18 -2.2 2,641,902 - Synpcc7942_2563 0.18 -1.0 2,641,909 + Synpcc7942_2563 0.19 -1.2 2,641,917 - Synpcc7942_2563 0.19 -0.7 2,641,929 + Synpcc7942_2563 0.19 -1.8 2,641,941 + Synpcc7942_2563 0.20 -0.5 2,641,955 + Synpcc7942_2563 0.20 -1.9 2,641,964 + Synpcc7942_2563 0.20 -2.4 2,641,966 - Synpcc7942_2563 0.21 -1.1 2,642,003 + Synpcc7942_2563 0.22 -1.3 2,642,028 + Synpcc7942_2563 0.23 +0.0 2,642,043 + Synpcc7942_2563 0.23 -2.2 2,642,043 + Synpcc7942_2563 0.23 -1.5 2,642,043 + Synpcc7942_2563 0.23 -1.0 2,642,051 - Synpcc7942_2563 0.23 -1.5 2,642,051 - Synpcc7942_2563 0.23 +0.7 2,642,051 - Synpcc7942_2563 0.23 -1.6 2,642,087 + Synpcc7942_2563 0.25 -1.7 2,642,093 + Synpcc7942_2563 0.25 -0.8 2,642,136 - Synpcc7942_2563 0.26 -1.6 2,642,173 + Synpcc7942_2563 0.27 -1.9 2,642,181 - Synpcc7942_2563 0.28 -0.0 2,642,251 + Synpcc7942_2563 0.30 -0.5 2,642,253 - Synpcc7942_2563 0.30 -2.5 2,642,265 - Synpcc7942_2563 0.31 -0.5 2,642,311 + Synpcc7942_2563 0.32 -0.8 2,642,318 + Synpcc7942_2563 0.32 -2.0 2,642,326 - Synpcc7942_2563 0.33 -2.7 2,642,331 - Synpcc7942_2563 0.33 -0.7 2,642,377 + +0.5 2,642,385 - Synpcc7942_2563 0.34 -0.1 2,642,387 + Synpcc7942_2563 0.35 -2.3 2,642,397 + Synpcc7942_2563 0.35 -0.1 2,642,415 - Synpcc7942_2563 0.35 -0.1 2,642,485 - Synpcc7942_2563 0.38 -1.5 2,642,510 + Synpcc7942_2563 0.39 -1.0 2,642,609 - Synpcc7942_2563 0.42 -0.7 2,642,664 + Synpcc7942_2563 0.44 -2.2 2,642,664 + Synpcc7942_2563 0.44 -1.8 2,642,672 - Synpcc7942_2563 0.44 -2.7 2,642,693 - Synpcc7942_2563 0.45 -0.2 2,642,695 + Synpcc7942_2563 0.45 -3.3 2,642,701 + Synpcc7942_2563 0.45 -1.2 2,642,709 - Synpcc7942_2563 0.45 -0.4 2,642,776 + Synpcc7942_2563 0.48 -0.7 2,642,781 + Synpcc7942_2563 0.48 -0.7 2,642,781 + Synpcc7942_2563 0.48 +2.8 2,642,807 + Synpcc7942_2563 0.49 -1.0 2,642,815 - Synpcc7942_2563 0.49 -1.2 2,642,835 + Synpcc7942_2563 0.49 -0.4 2,642,838 - Synpcc7942_2563 0.50 -2.5 2,642,841 - Synpcc7942_2563 0.50 -0.6 2,642,846 - Synpcc7942_2563 0.50 -1.5 2,642,860 + Synpcc7942_2563 0.50 -1.3 2,642,941 - Synpcc7942_2563 0.53 -1.0 2,643,020 - Synpcc7942_2563 0.56 -1.9 2,643,022 + Synpcc7942_2563 0.56 -1.8 2,643,029 - Synpcc7942_2563 0.56 -0.4 2,643,123 + Synpcc7942_2563 0.59 -1.5 2,643,246 + +0.2 2,643,282 - Synpcc7942_2563 0.64 -1.1 2,643,296 + +0.5 2,643,296 + Synpcc7942_2563 0.65 -0.3 2,643,296 + Synpcc7942_2563 0.65 -2.3 2,643,304 - Synpcc7942_2563 0.65 -1.1 2,643,304 - Synpcc7942_2563 0.65 +0.6 2,643,320 + Synpcc7942_2563 0.66 -1.6 2,643,328 - Synpcc7942_2563 0.66 -0.4 2,643,368 + Synpcc7942_2563 0.67 -0.9 2,643,368 + Synpcc7942_2563 0.67 -1.6 2,643,380 + Synpcc7942_2563 0.68 -1.4 2,643,388 - Synpcc7942_2563 0.68 -3.2 2,643,398 + Synpcc7942_2563 0.68 -1.2 2,643,401 - Synpcc7942_2563 0.68 +0.3 2,643,436 + Synpcc7942_2563 0.69 -2.0 2,643,450 - Synpcc7942_2563 0.70 -1.0 2,643,490 - Synpcc7942_2563 0.71 -0.8 2,643,503 - Synpcc7942_2563 0.72 -1.2 2,643,513 - Synpcc7942_2563 0.72 -0.8 2,643,517 + Synpcc7942_2563 0.72 -2.7 2,643,535 - Synpcc7942_2563 0.73 -0.3 2,643,540 - Synpcc7942_2563 0.73 -1.1 2,643,540 - Synpcc7942_2563 0.73 -0.3 2,643,634 - Synpcc7942_2563 0.76 -1.0 2,643,676 - Synpcc7942_2563 0.77 -1.0 2,643,683 + Synpcc7942_2563 0.78 -0.9 2,643,683 + Synpcc7942_2563 0.78 -1.7 2,643,688 + Synpcc7942_2563 0.78 -1.0 2,643,688 + Synpcc7942_2563 0.78 -0.3 2,643,688 + Synpcc7942_2563 0.78 -0.6 2,643,715 - Synpcc7942_2563 0.79 -0.1 2,643,720 - Synpcc7942_2563 0.79 -0.1 2,643,724 - Synpcc7942_2563 0.79 -0.7 2,643,756 + Synpcc7942_2563 0.80 +3.1 2,643,764 - Synpcc7942_2563 0.80 -2.2 2,643,764 - Synpcc7942_2563 0.80 +1.5 2,643,816 - Synpcc7942_2563 0.82 -1.0 2,643,818 + +0.9 2,643,900 + Synpcc7942_2563 0.85 -1.0 2,643,908 - Synpcc7942_2563 0.85 +0.3 2,643,919 + Synpcc7942_2563 0.86 -2.3 2,643,923 - Synpcc7942_2563 0.86 +0.0 2,643,927 - Synpcc7942_2563 0.86 +0.5 2,643,947 - Synpcc7942_2563 0.87 -0.5 2,643,966 - Synpcc7942_2563 0.87 -1.7 2,644,003 - Synpcc7942_2563 0.88 -0.8 2,644,009 + Synpcc7942_2563 0.89 -1.1 2,644,017 - Synpcc7942_2563 0.89 -0.3 2,644,037 + Synpcc7942_2563 0.90 -3.0 2,644,037 + Synpcc7942_2563 0.90 +1.3 2,644,037 + Synpcc7942_2563 0.90 -0.4 2,644,042 + Synpcc7942_2563 0.90 -0.8 2,644,042 + Synpcc7942_2563 0.90 -0.4 2,644,045 - Synpcc7942_2563 0.90 -1.1 2,644,045 - Synpcc7942_2563 0.90 +1.9 2,644,045 - Synpcc7942_2563 0.90 -1.1 2,644,085 + -0.2 2,644,092 + +1.2 2,644,093 - -0.9 2,644,095 - -0.8 2,644,100 - -1.0 2,644,100 - -0.4 2,644,110 - -1.6 2,644,223 + -0.8 2,644,278 - -0.2 2,644,283 + -1.0 2,644,283 + -0.8 2,644,301 - -0.3 2,644,306 + -1.6 2,644,309 - +0.7 2,644,795 + -0.3 2,644,795 + +0.2
Or see this region's nucleotide sequence