Experiment: BG11 with Chloride 0.48828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0895 and minD are separated by 174 nucleotides minD and minE are separated by 14 nucleotides minE and Synpcc7942_0898 overlap by 4 nucleotides Synpcc7942_0898 and tRNA-Thr are separated by 13 nucleotides tRNA-Thr and Synpcc7942_0899 are separated by 95 nucleotides
Synpcc7942_0895: Synpcc7942_0895 - hypothetical protein, at 905,485 to 906,657
_0895
Synpcc7942_0896: minD - septum site-determining protein MinD, at 906,832 to 907,638
minD
Synpcc7942_0897: minE - cell division topological specificity factor MinE, at 907,653 to 907,928
minE
Synpcc7942_0898: Synpcc7942_0898 - ferredoxin like protein, at 907,925 to 908,317
_0898
Synpcc7942_R0041: tRNA-Thr - tRNA-Thr, at 908,331 to 908,402
tRNA-Thr
Synpcc7942_0899: Synpcc7942_0899 - hypothetical protein, at 908,498 to 909,295
_0899
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 906.638 kb on + strand at 906.640 kb on + strand at 906.648 kb on - strand at 906.661 kb on + strand at 906.710 kb on - strand at 906.717 kb on + strand at 906.717 kb on + strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.725 kb on - strand at 906.740 kb on + strand at 906.740 kb on + strand at 906.750 kb on + strand at 906.750 kb on + strand at 906.758 kb on - strand at 906.772 kb on + strand at 906.773 kb on + strand at 906.773 kb on + strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.781 kb on - strand at 906.829 kb on + strand at 906.829 kb on - strand at 906.854 kb on + strand at 906.855 kb on - strand at 906.866 kb on - strand at 906.914 kb on - strand, within minD at 906.914 kb on - strand, within minD at 906.968 kb on - strand, within minD at 907.010 kb on + strand, within minD at 907.053 kb on + strand, within minD at 907.060 kb on + strand, within minD at 907.061 kb on - strand, within minD at 907.091 kb on - strand, within minD at 907.096 kb on + strand at 907.104 kb on - strand, within minD at 907.132 kb on - strand, within minD at 907.143 kb on + strand, within minD at 907.145 kb on + strand, within minD at 907.218 kb on - strand, within minD at 907.251 kb on - strand, within minD at 907.284 kb on - strand, within minD at 907.286 kb on - strand, within minD at 907.314 kb on - strand, within minD at 907.452 kb on + strand, within minD at 907.469 kb on + strand, within minD at 907.532 kb on - strand, within minD at 907.547 kb on - strand, within minD at 907.555 kb on + strand, within minD at 907.579 kb on - strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.582 kb on + strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.590 kb on - strand at 907.925 kb on - strand at 907.933 kb on + strand at 908.045 kb on + strand, within Synpcc7942_0898 at 908.045 kb on + strand, within Synpcc7942_0898 at 908.053 kb on - strand, within Synpcc7942_0898 at 908.059 kb on - strand, within Synpcc7942_0898 at 908.097 kb on + strand, within Synpcc7942_0898 at 908.114 kb on + strand, within Synpcc7942_0898 at 908.128 kb on + strand, within Synpcc7942_0898 at 908.134 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.154 kb on + strand, within Synpcc7942_0898 at 908.171 kb on - strand, within Synpcc7942_0898 at 908.179 kb on - strand, within Synpcc7942_0898 at 908.184 kb on - strand, within Synpcc7942_0898 at 908.211 kb on + strand, within Synpcc7942_0898 at 908.219 kb on - strand, within Synpcc7942_0898 at 908.243 kb on + strand, within Synpcc7942_0898 at 908.272 kb on - strand, within Synpcc7942_0898 at 908.311 kb on + strand at 908.415 kb on - strand at 908.457 kb on + strand at 908.503 kb on - strand at 908.505 kb on + strand at 908.508 kb on + strand at 908.521 kb on - strand at 908.531 kb on - strand at 908.533 kb on + strand at 908.533 kb on + strand at 908.544 kb on + strand at 908.547 kb on - strand at 908.549 kb on - strand at 908.563 kb on + strand at 908.575 kb on + strand at 908.591 kb on - strand, within Synpcc7942_0899
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM remove 906,638 + -1.8 906,640 + +1.0 906,648 - -1.1 906,661 + -1.8 906,710 - +0.1 906,717 + -0.4 906,717 + -0.9 906,725 - -1.1 906,725 - +0.4 906,725 - -0.6 906,740 + +0.3 906,740 + -0.4 906,750 + -2.9 906,750 + -2.1 906,758 - +0.1 906,772 + -1.4 906,773 + -1.3 906,773 + -2.4 906,781 - -0.2 906,781 - +0.4 906,781 - -1.6 906,829 + +0.1 906,829 - -1.6 906,854 + -2.1 906,855 - +0.2 906,866 - -1.1 906,914 - minD Synpcc7942_0896 0.10 -0.1 906,914 - minD Synpcc7942_0896 0.10 -1.7 906,968 - minD Synpcc7942_0896 0.17 -1.0 907,010 + minD Synpcc7942_0896 0.22 -1.0 907,053 + minD Synpcc7942_0896 0.27 -1.1 907,060 + minD Synpcc7942_0896 0.28 +0.4 907,061 - minD Synpcc7942_0896 0.28 +1.3 907,091 - minD Synpcc7942_0896 0.32 -1.4 907,096 + +2.4 907,104 - minD Synpcc7942_0896 0.34 -1.7 907,132 - minD Synpcc7942_0896 0.37 -2.2 907,143 + minD Synpcc7942_0896 0.39 +0.2 907,145 + minD Synpcc7942_0896 0.39 -1.4 907,218 - minD Synpcc7942_0896 0.48 +0.1 907,251 - minD Synpcc7942_0896 0.52 -0.4 907,284 - minD Synpcc7942_0896 0.56 -1.2 907,286 - minD Synpcc7942_0896 0.56 -0.4 907,314 - minD Synpcc7942_0896 0.60 -0.7 907,452 + minD Synpcc7942_0896 0.77 -1.5 907,469 + minD Synpcc7942_0896 0.79 -1.0 907,532 - minD Synpcc7942_0896 0.87 -1.0 907,547 - minD Synpcc7942_0896 0.89 +0.1 907,555 + minD Synpcc7942_0896 0.90 +0.2 907,579 - -0.7 907,582 + -0.9 907,582 + -1.7 907,582 + -1.7 907,582 + -1.1 907,582 + -2.1 907,582 + -0.6 907,582 + +0.5 907,590 - -0.2 907,590 - -1.5 907,590 - -2.5 907,590 - -3.5 907,925 - -0.9 907,933 + +0.6 908,045 + Synpcc7942_0898 0.31 -2.4 908,045 + Synpcc7942_0898 0.31 -1.4 908,053 - Synpcc7942_0898 0.33 -0.7 908,059 - Synpcc7942_0898 0.34 -2.0 908,097 + Synpcc7942_0898 0.44 -1.0 908,114 + Synpcc7942_0898 0.48 +0.1 908,128 + Synpcc7942_0898 0.52 -2.4 908,134 + Synpcc7942_0898 0.53 -0.1 908,154 + Synpcc7942_0898 0.58 -0.4 908,154 + Synpcc7942_0898 0.58 -1.1 908,171 - Synpcc7942_0898 0.63 -1.4 908,179 - Synpcc7942_0898 0.65 +0.2 908,184 - Synpcc7942_0898 0.66 -2.8 908,211 + Synpcc7942_0898 0.73 -1.0 908,219 - Synpcc7942_0898 0.75 -0.7 908,243 + Synpcc7942_0898 0.81 +0.6 908,272 - Synpcc7942_0898 0.88 +1.4 908,311 + -1.4 908,415 - -0.0 908,457 + -1.8 908,503 - -1.1 908,505 + -0.1 908,508 + +0.6 908,521 - +0.6 908,531 - +0.5 908,533 + +0.5 908,533 + +0.3 908,544 + +1.2 908,547 - -0.8 908,549 - +0.1 908,563 + -1.1 908,575 + -1.4 908,591 - Synpcc7942_0899 0.12 -0.0
Or see this region's nucleotide sequence