Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0806

Experiment: BG11 with Chloride 0.48828125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdxA and Synpcc7942_0805 overlap by 1 nucleotidesSynpcc7942_0805 and Synpcc7942_0806 overlap by 1 nucleotidesSynpcc7942_0806 and Synpcc7942_0807 are separated by 13 nucleotides Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349 pdxA Synpcc7942_0805: Synpcc7942_0805 - hypothetical protein, at 798,349 to 799,095 _0805 Synpcc7942_0806: Synpcc7942_0806 - hypothetical protein, at 799,095 to 799,826 _0806 Synpcc7942_0807: Synpcc7942_0807 - hypothetical protein, at 799,840 to 800,679 _0807 Position (kb) 799 800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 798.318 kb on + strandat 798.344 kb on + strandat 798.359 kb on + strandat 798.368 kb on + strandat 798.370 kb on + strandat 798.370 kb on + strandat 798.397 kb on + strandat 798.405 kb on - strandat 798.405 kb on - strandat 798.405 kb on - strandat 798.411 kb on + strandat 798.483 kb on + strand, within Synpcc7942_0805at 798.502 kb on - strandat 798.538 kb on + strand, within Synpcc7942_0805at 798.547 kb on - strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on + strand, within Synpcc7942_0805at 798.557 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.565 kb on - strand, within Synpcc7942_0805at 798.581 kb on + strand, within Synpcc7942_0805at 798.583 kb on + strand, within Synpcc7942_0805at 798.615 kb on - strand, within Synpcc7942_0805at 798.629 kb on + strand, within Synpcc7942_0805at 798.639 kb on + strand, within Synpcc7942_0805at 798.661 kb on - strand, within Synpcc7942_0805at 798.661 kb on - strandat 798.709 kb on + strand, within Synpcc7942_0805at 798.715 kb on - strand, within Synpcc7942_0805at 798.739 kb on - strand, within Synpcc7942_0805at 798.743 kb on + strand, within Synpcc7942_0805at 798.757 kb on + strand, within Synpcc7942_0805at 798.765 kb on - strand, within Synpcc7942_0805at 798.776 kb on - strand, within Synpcc7942_0805at 798.794 kb on + strand, within Synpcc7942_0805at 798.818 kb on - strand, within Synpcc7942_0805at 798.838 kb on - strandat 798.841 kb on + strand, within Synpcc7942_0805at 798.889 kb on + strand, within Synpcc7942_0805at 798.889 kb on + strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.916 kb on + strand, within Synpcc7942_0805at 798.965 kb on - strand, within Synpcc7942_0805at 799.059 kb on - strandat 799.079 kb on - strandat 799.123 kb on - strandat 799.132 kb on + strandat 799.209 kb on + strand, within Synpcc7942_0806at 799.219 kb on + strand, within Synpcc7942_0806at 799.252 kb on - strand, within Synpcc7942_0806at 799.257 kb on + strand, within Synpcc7942_0806at 799.257 kb on + strand, within Synpcc7942_0806at 799.265 kb on - strand, within Synpcc7942_0806at 799.265 kb on - strand, within Synpcc7942_0806at 799.285 kb on - strand, within Synpcc7942_0806at 799.297 kb on + strand, within Synpcc7942_0806at 799.302 kb on + strand, within Synpcc7942_0806at 799.324 kb on + strand, within Synpcc7942_0806at 799.324 kb on + strand, within Synpcc7942_0806at 799.332 kb on - strand, within Synpcc7942_0806at 799.334 kb on + strand, within Synpcc7942_0806at 799.342 kb on - strand, within Synpcc7942_0806at 799.344 kb on - strand, within Synpcc7942_0806at 799.354 kb on - strand, within Synpcc7942_0806at 799.354 kb on - strand, within Synpcc7942_0806at 799.381 kb on + strand, within Synpcc7942_0806at 799.399 kb on + strand, within Synpcc7942_0806at 799.520 kb on + strand, within Synpcc7942_0806at 799.540 kb on + strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.562 kb on - strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.658 kb on - strand, within Synpcc7942_0806at 799.685 kb on + strand, within Synpcc7942_0806at 799.687 kb on - strand, within Synpcc7942_0806at 799.730 kb on + strand, within Synpcc7942_0806at 799.742 kb on - strand, within Synpcc7942_0806at 799.743 kb on - strand, within Synpcc7942_0806at 799.768 kb on + strandat 799.787 kb on - strandat 799.794 kb on - strandat 799.798 kb on - strandat 799.823 kb on + strandat 799.857 kb on - strandat 799.900 kb on + strandat 799.910 kb on - strandat 799.910 kb on - strandat 799.927 kb on + strand, within Synpcc7942_0807at 799.935 kb on - strand, within Synpcc7942_0807at 799.945 kb on - strand, within Synpcc7942_0807at 799.957 kb on + strand, within Synpcc7942_0807at 799.957 kb on + strand, within Synpcc7942_0807at 799.963 kb on - strand, within Synpcc7942_0807at 800.012 kb on + strand, within Synpcc7942_0807at 800.087 kb on - strand, within Synpcc7942_0807at 800.126 kb on + strandat 800.133 kb on - strand, within Synpcc7942_0807at 800.134 kb on - strand, within Synpcc7942_0807at 800.141 kb on + strand, within Synpcc7942_0807at 800.149 kb on - strand, within Synpcc7942_0807at 800.177 kb on + strand, within Synpcc7942_0807at 800.195 kb on + strand, within Synpcc7942_0807at 800.195 kb on + strand, within Synpcc7942_0807at 800.220 kb on + strand, within Synpcc7942_0807at 800.229 kb on - strand, within Synpcc7942_0807at 800.261 kb on + strand, within Synpcc7942_0807at 800.268 kb on + strand, within Synpcc7942_0807at 800.269 kb on + strand, within Synpcc7942_0807at 800.291 kb on + strand, within Synpcc7942_0807at 800.314 kb on + strand, within Synpcc7942_0807at 800.316 kb on + strand, within Synpcc7942_0807at 800.339 kb on - strand, within Synpcc7942_0807at 800.350 kb on - strand, within Synpcc7942_0807at 800.350 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.397 kb on + strand, within Synpcc7942_0807at 800.405 kb on - strand, within Synpcc7942_0807at 800.429 kb on + strand, within Synpcc7942_0807at 800.594 kb on + strand, within Synpcc7942_0807at 800.682 kb on + strandat 800.682 kb on - strandat 800.702 kb on + strandat 800.745 kb on + strandat 800.755 kb on + strandat 800.766 kb on - strandat 800.769 kb on - strandat 800.794 kb on - strandat 800.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM
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798,318 + -1.5
798,344 + -0.7
798,359 + -1.4
798,368 + -2.9
798,370 + +0.6
798,370 + -0.5
798,397 + -1.9
798,405 - -1.5
798,405 - -0.1
798,405 - -0.7
798,411 + -1.4
798,483 + Synpcc7942_0805 0.18 -1.8
798,502 - +0.9
798,538 + Synpcc7942_0805 0.25 -2.0
798,547 - Synpcc7942_0805 0.27 +0.1
798,557 + Synpcc7942_0805 0.28 -1.2
798,557 + Synpcc7942_0805 0.28 -1.0
798,557 + Synpcc7942_0805 0.28 -1.7
798,557 + Synpcc7942_0805 0.28 -1.0
798,557 + Synpcc7942_0805 0.28 -1.5
798,557 + Synpcc7942_0805 0.28 -2.0
798,557 + Synpcc7942_0805 0.28 -1.0
798,557 + Synpcc7942_0805 0.28 -1.5
798,557 - Synpcc7942_0805 0.28 +0.6
798,565 - Synpcc7942_0805 0.29 -0.1
798,565 - Synpcc7942_0805 0.29 -3.4
798,565 - Synpcc7942_0805 0.29 -2.3
798,565 - Synpcc7942_0805 0.29 -1.8
798,565 - Synpcc7942_0805 0.29 -1.0
798,565 - Synpcc7942_0805 0.29 -2.1
798,565 - Synpcc7942_0805 0.29 -0.4
798,581 + Synpcc7942_0805 0.31 -2.3
798,583 + Synpcc7942_0805 0.31 +0.2
798,615 - Synpcc7942_0805 0.36 -1.2
798,629 + Synpcc7942_0805 0.37 -0.9
798,639 + Synpcc7942_0805 0.39 -1.2
798,661 - Synpcc7942_0805 0.42 -1.4
798,661 - -0.1
798,709 + Synpcc7942_0805 0.48 -2.2
798,715 - Synpcc7942_0805 0.49 -0.7
798,739 - Synpcc7942_0805 0.52 -1.4
798,743 + Synpcc7942_0805 0.53 -2.4
798,757 + Synpcc7942_0805 0.55 -1.8
798,765 - Synpcc7942_0805 0.56 -0.1
798,776 - Synpcc7942_0805 0.57 -0.9
798,794 + Synpcc7942_0805 0.60 -1.6
798,818 - Synpcc7942_0805 0.63 +0.6
798,838 - +2.5
798,841 + Synpcc7942_0805 0.66 +0.5
798,889 + Synpcc7942_0805 0.72 -3.0
798,889 + Synpcc7942_0805 0.72 -2.2
798,897 - Synpcc7942_0805 0.73 -1.2
798,897 - Synpcc7942_0805 0.73 -1.9
798,897 - Synpcc7942_0805 0.73 -0.4
798,897 - Synpcc7942_0805 0.73 +0.3
798,916 + Synpcc7942_0805 0.76 -2.0
798,965 - Synpcc7942_0805 0.82 -1.3
799,059 - -0.1
799,079 - +0.0
799,123 - +0.1
799,132 + -0.4
799,209 + Synpcc7942_0806 0.16 -1.7
799,219 + Synpcc7942_0806 0.17 -2.4
799,252 - Synpcc7942_0806 0.21 -1.0
799,257 + Synpcc7942_0806 0.22 -2.8
799,257 + Synpcc7942_0806 0.22 +0.4
799,265 - Synpcc7942_0806 0.23 -1.3
799,265 - Synpcc7942_0806 0.23 -1.8
799,285 - Synpcc7942_0806 0.26 -0.8
799,297 + Synpcc7942_0806 0.28 -1.2
799,302 + Synpcc7942_0806 0.28 +0.7
799,324 + Synpcc7942_0806 0.31 -1.8
799,324 + Synpcc7942_0806 0.31 -1.2
799,332 - Synpcc7942_0806 0.32 -1.1
799,334 + Synpcc7942_0806 0.33 -0.1
799,342 - Synpcc7942_0806 0.34 -1.5
799,344 - Synpcc7942_0806 0.34 -0.2
799,354 - Synpcc7942_0806 0.35 +0.1
799,354 - Synpcc7942_0806 0.35 -0.1
799,381 + Synpcc7942_0806 0.39 -1.6
799,399 + Synpcc7942_0806 0.42 -2.5
799,520 + Synpcc7942_0806 0.58 -0.5
799,540 + Synpcc7942_0806 0.61 -0.2
799,548 - Synpcc7942_0806 0.62 -1.9
799,548 - Synpcc7942_0806 0.62 -0.5
799,548 - Synpcc7942_0806 0.62 -0.9
799,562 - Synpcc7942_0806 0.64 -2.6
799,582 + Synpcc7942_0806 0.67 +0.9
799,582 + Synpcc7942_0806 0.67 -1.6
799,582 + Synpcc7942_0806 0.67 +0.5
799,658 - Synpcc7942_0806 0.77 -2.1
799,685 + Synpcc7942_0806 0.81 -0.7
799,687 - Synpcc7942_0806 0.81 -1.2
799,730 + Synpcc7942_0806 0.87 -0.6
799,742 - Synpcc7942_0806 0.88 +0.9
799,743 - Synpcc7942_0806 0.89 +0.1
799,768 + -0.5
799,787 - -0.9
799,794 - -0.4
799,798 - -0.2
799,823 + +0.5
799,857 - -0.2
799,900 + -1.4
799,910 - -1.3
799,910 - +0.6
799,927 + Synpcc7942_0807 0.10 -0.1
799,935 - Synpcc7942_0807 0.11 +1.9
799,945 - Synpcc7942_0807 0.12 +0.3
799,957 + Synpcc7942_0807 0.14 +1.6
799,957 + Synpcc7942_0807 0.14 +0.3
799,963 - Synpcc7942_0807 0.15 +0.5
800,012 + Synpcc7942_0807 0.20 -0.7
800,087 - Synpcc7942_0807 0.29 +1.4
800,126 + +0.6
800,133 - Synpcc7942_0807 0.35 +1.4
800,134 - Synpcc7942_0807 0.35 -0.6
800,141 + Synpcc7942_0807 0.36 +0.4
800,149 - Synpcc7942_0807 0.37 -0.4
800,177 + Synpcc7942_0807 0.40 -1.1
800,195 + Synpcc7942_0807 0.42 +1.3
800,195 + Synpcc7942_0807 0.42 -1.7
800,220 + Synpcc7942_0807 0.45 -0.0
800,229 - Synpcc7942_0807 0.46 +1.7
800,261 + Synpcc7942_0807 0.50 +0.3
800,268 + Synpcc7942_0807 0.51 -1.4
800,269 + Synpcc7942_0807 0.51 -0.1
800,291 + Synpcc7942_0807 0.54 +0.1
800,314 + Synpcc7942_0807 0.56 +0.4
800,316 + Synpcc7942_0807 0.57 +0.3
800,339 - Synpcc7942_0807 0.59 +1.3
800,350 - Synpcc7942_0807 0.61 -0.1
800,350 - Synpcc7942_0807 0.61 +2.0
800,372 - Synpcc7942_0807 0.63 -1.9
800,372 - Synpcc7942_0807 0.63 +0.1
800,372 - Synpcc7942_0807 0.63 +0.0
800,397 + Synpcc7942_0807 0.66 -1.8
800,405 - Synpcc7942_0807 0.67 -2.4
800,429 + Synpcc7942_0807 0.70 -0.4
800,594 + Synpcc7942_0807 0.90 -0.1
800,682 + -0.6
800,682 - -0.4
800,702 + -0.3
800,745 + -2.2
800,755 + -0.9
800,766 - +0.8
800,769 - -0.7
800,794 - -1.2
800,801 - -1.9

Or see this region's nucleotide sequence