Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0774

Experiment: BG11 with Chloride 0.48828125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0772 and ycf52 are separated by 14 nucleotidesycf52 and Synpcc7942_0774 are separated by 18 nucleotidesSynpcc7942_0774 and Synpcc7942_0775 are separated by 138 nucleotidesSynpcc7942_0775 and crtE overlap by 1 nucleotides Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577 _0772 Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197 ycf52 Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103 _0774 Synpcc7942_0775: Synpcc7942_0775 - hypothetical protein, at 767,242 to 767,721 _0775 Synpcc7942_0776: crtE - farnesyl-diphosphate synthase, at 767,721 to 768,626 crtE Position (kb) 766 767 768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 765.295 kb on + strand, within Synpcc7942_0772at 765.308 kb on - strand, within Synpcc7942_0772at 765.310 kb on - strand, within Synpcc7942_0772at 765.338 kb on - strand, within Synpcc7942_0772at 765.338 kb on - strand, within Synpcc7942_0772at 765.355 kb on - strand, within Synpcc7942_0772at 765.377 kb on + strand, within Synpcc7942_0772at 765.390 kb on + strand, within Synpcc7942_0772at 765.390 kb on + strand, within Synpcc7942_0772at 765.414 kb on + strand, within Synpcc7942_0772at 765.420 kb on - strand, within Synpcc7942_0772at 765.422 kb on - strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.435 kb on + strand, within Synpcc7942_0772at 765.436 kb on + strand, within Synpcc7942_0772at 765.456 kb on + strand, within Synpcc7942_0772at 765.464 kb on - strand, within Synpcc7942_0772at 765.521 kb on + strandat 765.523 kb on - strandat 765.535 kb on + strandat 765.542 kb on + strandat 765.542 kb on + strandat 765.542 kb on + strandat 765.547 kb on + strandat 765.550 kb on - strandat 765.550 kb on - strandat 765.552 kb on + strandat 765.553 kb on - strandat 765.579 kb on - strandat 765.581 kb on - strandat 765.687 kb on + strand, within ycf52at 765.701 kb on + strand, within ycf52at 765.748 kb on + strand, within ycf52at 765.762 kb on - strand, within ycf52at 765.786 kb on - strand, within ycf52at 765.813 kb on + strand, within ycf52at 765.850 kb on + strand, within ycf52at 765.856 kb on + strand, within ycf52at 765.919 kb on + strand, within ycf52at 765.952 kb on - strand, within ycf52at 765.952 kb on - strand, within ycf52at 766.014 kb on - strand, within ycf52at 766.048 kb on - strand, within ycf52at 766.085 kb on - strand, within ycf52at 766.092 kb on - strand, within ycf52at 766.100 kb on + strand, within ycf52at 766.101 kb on - strand, within ycf52at 766.113 kb on - strand, within ycf52at 766.143 kb on - strandat 766.154 kb on + strandat 766.154 kb on + strandat 766.162 kb on - strandat 766.182 kb on - strandat 766.186 kb on - strandat 766.221 kb on - strandat 766.248 kb on - strandat 766.250 kb on + strandat 766.258 kb on - strandat 766.272 kb on - strandat 766.310 kb on + strand, within Synpcc7942_0774at 766.322 kb on + strand, within Synpcc7942_0774at 766.322 kb on + strand, within Synpcc7942_0774at 766.339 kb on + strand, within Synpcc7942_0774at 766.354 kb on - strand, within Synpcc7942_0774at 766.375 kb on - strand, within Synpcc7942_0774at 766.375 kb on - strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.387 kb on - strand, within Synpcc7942_0774at 766.387 kb on - strand, within Synpcc7942_0774at 766.402 kb on - strand, within Synpcc7942_0774at 766.402 kb on - strand, within Synpcc7942_0774at 766.415 kb on + strand, within Synpcc7942_0774at 766.418 kb on - strand, within Synpcc7942_0774at 766.423 kb on - strand, within Synpcc7942_0774at 766.423 kb on - strand, within Synpcc7942_0774at 766.436 kb on - strand, within Synpcc7942_0774at 766.473 kb on - strand, within Synpcc7942_0774at 766.482 kb on - strand, within Synpcc7942_0774at 766.509 kb on + strand, within Synpcc7942_0774at 766.523 kb on + strand, within Synpcc7942_0774at 766.535 kb on + strand, within Synpcc7942_0774at 766.535 kb on + strand, within Synpcc7942_0774at 766.540 kb on + strand, within Synpcc7942_0774at 766.543 kb on - strand, within Synpcc7942_0774at 766.543 kb on - strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.585 kb on - strand, within Synpcc7942_0774at 766.604 kb on - strandat 766.631 kb on + strand, within Synpcc7942_0774at 766.803 kb on + strand, within Synpcc7942_0774at 766.806 kb on - strand, within Synpcc7942_0774at 766.824 kb on + strand, within Synpcc7942_0774at 766.903 kb on - strandat 766.921 kb on + strand, within Synpcc7942_0774at 766.923 kb on - strand, within Synpcc7942_0774at 766.972 kb on - strand, within Synpcc7942_0774at 766.975 kb on + strand, within Synpcc7942_0774at 766.983 kb on - strand, within Synpcc7942_0774at 767.012 kb on + strand, within Synpcc7942_0774at 767.032 kb on + strandat 767.065 kb on + strandat 767.068 kb on - strandat 767.073 kb on - strandat 767.073 kb on - strandat 767.097 kb on + strandat 767.105 kb on - strandat 767.107 kb on + strandat 767.128 kb on + strandat 767.155 kb on + strandat 767.202 kb on + strandat 767.210 kb on - strandat 767.210 kb on - strandat 767.215 kb on + strandat 767.218 kb on - strandat 767.221 kb on + strandat 767.223 kb on - strandat 767.255 kb on + strandat 767.273 kb on - strandat 767.278 kb on - strandat 767.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM
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765,295 + Synpcc7942_0772 0.52 +0.2
765,308 - Synpcc7942_0772 0.55 +0.1
765,310 - Synpcc7942_0772 0.55 -1.2
765,338 - Synpcc7942_0772 0.60 -1.8
765,338 - Synpcc7942_0772 0.60 -0.2
765,355 - Synpcc7942_0772 0.62 -0.9
765,377 + Synpcc7942_0772 0.66 -1.6
765,390 + Synpcc7942_0772 0.68 +0.9
765,390 + Synpcc7942_0772 0.68 -1.1
765,414 + Synpcc7942_0772 0.72 -0.8
765,420 - Synpcc7942_0772 0.73 -1.2
765,422 - Synpcc7942_0772 0.74 -1.2
765,424 + Synpcc7942_0772 0.74 -0.9
765,424 + Synpcc7942_0772 0.74 -0.7
765,424 + Synpcc7942_0772 0.74 -2.5
765,424 + Synpcc7942_0772 0.74 -1.0
765,424 + Synpcc7942_0772 0.74 -1.7
765,424 + Synpcc7942_0772 0.74 +0.7
765,424 + Synpcc7942_0772 0.74 -0.1
765,432 - Synpcc7942_0772 0.75 +0.8
765,432 - Synpcc7942_0772 0.75 +0.7
765,432 - Synpcc7942_0772 0.75 -0.2
765,432 - Synpcc7942_0772 0.75 +0.0
765,432 - Synpcc7942_0772 0.75 +2.8
765,432 - Synpcc7942_0772 0.75 +4.0
765,435 + Synpcc7942_0772 0.76 +0.6
765,436 + Synpcc7942_0772 0.76 +0.3
765,456 + Synpcc7942_0772 0.79 -1.2
765,464 - Synpcc7942_0772 0.81 -0.3
765,521 + -2.2
765,523 - +0.3
765,535 + +0.1
765,542 + +0.9
765,542 + +1.1
765,542 + -0.2
765,547 + -1.1
765,550 - -0.6
765,550 - -0.6
765,552 + +1.6
765,553 - -0.5
765,579 - -0.0
765,581 - -1.2
765,687 + ycf52 Synpcc7942_0773 0.16 -0.3
765,701 + ycf52 Synpcc7942_0773 0.18 -2.1
765,748 + ycf52 Synpcc7942_0773 0.26 -2.1
765,762 - ycf52 Synpcc7942_0773 0.28 -2.7
765,786 - ycf52 Synpcc7942_0773 0.32 -2.3
765,813 + ycf52 Synpcc7942_0773 0.36 -0.3
765,850 + ycf52 Synpcc7942_0773 0.43 -1.0
765,856 + ycf52 Synpcc7942_0773 0.44 -1.9
765,919 + ycf52 Synpcc7942_0773 0.54 -1.4
765,952 - ycf52 Synpcc7942_0773 0.59 -2.3
765,952 - ycf52 Synpcc7942_0773 0.59 -1.0
766,014 - ycf52 Synpcc7942_0773 0.70 -1.4
766,048 - ycf52 Synpcc7942_0773 0.75 -2.1
766,085 - ycf52 Synpcc7942_0773 0.81 -0.9
766,092 - ycf52 Synpcc7942_0773 0.83 -1.4
766,100 + ycf52 Synpcc7942_0773 0.84 -1.8
766,101 - ycf52 Synpcc7942_0773 0.84 -2.2
766,113 - ycf52 Synpcc7942_0773 0.86 -2.0
766,143 - -0.2
766,154 + -0.0
766,154 + -1.5
766,162 - -0.7
766,182 - -2.3
766,186 - +1.5
766,221 - -0.9
766,248 - -1.3
766,250 + +1.5
766,258 - -1.0
766,272 - -2.2
766,310 + Synpcc7942_0774 0.11 -0.5
766,322 + Synpcc7942_0774 0.12 -1.3
766,322 + Synpcc7942_0774 0.12 -0.6
766,339 + Synpcc7942_0774 0.14 -0.9
766,354 - Synpcc7942_0774 0.16 +0.1
766,375 - Synpcc7942_0774 0.18 -1.5
766,375 - Synpcc7942_0774 0.18 +0.1
766,379 + Synpcc7942_0774 0.18 -0.9
766,379 + Synpcc7942_0774 0.18 -1.9
766,379 + Synpcc7942_0774 0.18 -1.7
766,379 + Synpcc7942_0774 0.18 -1.2
766,387 - Synpcc7942_0774 0.19 +0.1
766,387 - Synpcc7942_0774 0.19 -0.7
766,402 - Synpcc7942_0774 0.21 -1.1
766,402 - Synpcc7942_0774 0.21 -0.9
766,415 + Synpcc7942_0774 0.22 -0.3
766,418 - Synpcc7942_0774 0.23 +0.3
766,423 - Synpcc7942_0774 0.23 -1.4
766,423 - Synpcc7942_0774 0.23 -0.6
766,436 - Synpcc7942_0774 0.25 +0.9
766,473 - Synpcc7942_0774 0.29 -2.7
766,482 - Synpcc7942_0774 0.30 -0.1
766,509 + Synpcc7942_0774 0.33 -1.0
766,523 + Synpcc7942_0774 0.35 -3.3
766,535 + Synpcc7942_0774 0.36 +0.5
766,535 + Synpcc7942_0774 0.36 -1.3
766,540 + Synpcc7942_0774 0.36 -0.7
766,543 - Synpcc7942_0774 0.37 -0.4
766,543 - Synpcc7942_0774 0.37 +0.5
766,545 + Synpcc7942_0774 0.37 -0.7
766,545 + Synpcc7942_0774 0.37 +0.9
766,545 + Synpcc7942_0774 0.37 -0.6
766,545 + Synpcc7942_0774 0.37 -2.9
766,545 + Synpcc7942_0774 0.37 -0.7
766,553 - Synpcc7942_0774 0.38 -1.0
766,553 - Synpcc7942_0774 0.38 -1.1
766,553 - Synpcc7942_0774 0.38 -1.8
766,553 - Synpcc7942_0774 0.38 -1.8
766,585 - Synpcc7942_0774 0.42 -1.4
766,604 - +0.5
766,631 + Synpcc7942_0774 0.47 -1.3
766,803 + Synpcc7942_0774 0.66 -0.4
766,806 - Synpcc7942_0774 0.66 -1.6
766,824 + Synpcc7942_0774 0.68 -1.3
766,903 - +0.5
766,921 + Synpcc7942_0774 0.79 +0.5
766,923 - Synpcc7942_0774 0.80 -1.3
766,972 - Synpcc7942_0774 0.85 -2.6
766,975 + Synpcc7942_0774 0.85 -1.4
766,983 - Synpcc7942_0774 0.86 -1.8
767,012 + Synpcc7942_0774 0.90 -1.3
767,032 + -1.0
767,065 + -1.2
767,068 - -0.8
767,073 - -1.1
767,073 - -3.6
767,097 + -2.3
767,105 - +0.5
767,107 + -0.7
767,128 + +1.2
767,155 + -0.9
767,202 + +0.1
767,210 - -1.2
767,210 - -0.5
767,215 + +0.0
767,218 - -1.0
767,221 + -0.4
767,223 - +0.2
767,255 + -4.5
767,273 - -2.5
767,278 - -0.5
767,718 + -0.6

Or see this region's nucleotide sequence