Experiment: BG11 with Chloride 0.48828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpC and petF are separated by 108 nucleotides petF and Synpcc7942_0339 are separated by 160 nucleotides
Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408
atpC
Synpcc7942_0338: petF - Ferredoxin (2Fe-2S), at 333,517 to 333,834
petF
Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074
_0339
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 333.461 kb on - strand at 333.469 kb on - strand at 333.555 kb on + strand, within petF at 333.564 kb on + strand, within petF at 333.564 kb on - strand, within petF at 333.597 kb on - strand, within petF at 333.601 kb on + strand, within petF at 333.640 kb on + strand, within petF at 333.645 kb on + strand, within petF at 333.656 kb on - strand, within petF at 333.662 kb on - strand, within petF at 333.708 kb on + strand, within petF at 333.713 kb on + strand, within petF at 333.727 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.740 kb on + strand, within petF at 333.740 kb on - strand, within petF at 333.741 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.756 kb on - strand, within petF at 333.757 kb on - strand, within petF at 333.801 kb on + strand, within petF at 333.810 kb on - strand at 333.829 kb on + strand at 333.843 kb on + strand at 333.857 kb on + strand at 333.866 kb on - strand at 333.917 kb on - strand at 333.961 kb on + strand at 333.991 kb on + strand at 333.991 kb on + strand at 333.999 kb on - strand at 333.999 kb on - strand at 334.003 kb on - strand at 334.007 kb on + strand at 334.007 kb on + strand at 334.015 kb on - strand at 334.105 kb on - strand, within Synpcc7942_0339 at 334.153 kb on + strand, within Synpcc7942_0339 at 334.375 kb on + strand, within Synpcc7942_0339 at 334.429 kb on + strand, within Synpcc7942_0339 at 334.468 kb on + strand, within Synpcc7942_0339 at 334.547 kb on + strand, within Synpcc7942_0339 at 334.758 kb on + strand, within Synpcc7942_0339 at 334.765 kb on + strand, within Synpcc7942_0339 at 334.790 kb on + strand, within Synpcc7942_0339 at 334.821 kb on - strand, within Synpcc7942_0339
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM remove 333,461 - -1.0 333,469 - +0.9 333,555 + petF Synpcc7942_0338 0.12 -0.3 333,564 + petF Synpcc7942_0338 0.15 +5.3 333,564 - petF Synpcc7942_0338 0.15 +0.4 333,597 - petF Synpcc7942_0338 0.25 +0.4 333,601 + petF Synpcc7942_0338 0.26 +1.6 333,640 + petF Synpcc7942_0338 0.39 +0.4 333,645 + petF Synpcc7942_0338 0.40 -2.0 333,656 - petF Synpcc7942_0338 0.44 -0.2 333,662 - petF Synpcc7942_0338 0.46 +0.6 333,708 + petF Synpcc7942_0338 0.60 -1.0 333,713 + petF Synpcc7942_0338 0.62 +0.1 333,727 + petF Synpcc7942_0338 0.66 -0.4 333,739 + petF Synpcc7942_0338 0.70 +0.7 333,739 + petF Synpcc7942_0338 0.70 -0.5 333,739 + petF Synpcc7942_0338 0.70 +0.1 333,739 + petF Synpcc7942_0338 0.70 +0.4 333,739 + petF Synpcc7942_0338 0.70 -1.0 333,740 + petF Synpcc7942_0338 0.70 -0.1 333,740 - petF Synpcc7942_0338 0.70 +1.3 333,741 - petF Synpcc7942_0338 0.70 -1.2 333,747 - petF Synpcc7942_0338 0.72 -0.2 333,747 - petF Synpcc7942_0338 0.72 -1.2 333,747 - petF Synpcc7942_0338 0.72 -1.3 333,747 - petF Synpcc7942_0338 0.72 +0.4 333,747 - petF Synpcc7942_0338 0.72 -0.4 333,747 - petF Synpcc7942_0338 0.72 -2.0 333,756 - petF Synpcc7942_0338 0.75 -0.0 333,757 - petF Synpcc7942_0338 0.75 +0.8 333,801 + petF Synpcc7942_0338 0.89 +1.0 333,810 - -0.8 333,829 + -0.6 333,843 + +1.0 333,857 + -1.0 333,866 - +1.3 333,917 - -0.4 333,961 + +2.6 333,991 + -0.7 333,991 + -0.7 333,999 - -0.7 333,999 - -1.4 334,003 - +0.6 334,007 + +0.7 334,007 + +3.3 334,015 - -2.4 334,105 - Synpcc7942_0339 0.10 +1.9 334,153 + Synpcc7942_0339 0.15 +1.7 334,375 + Synpcc7942_0339 0.35 +1.6 334,429 + Synpcc7942_0339 0.40 +0.3 334,468 + Synpcc7942_0339 0.44 +5.2 334,547 + Synpcc7942_0339 0.51 +2.4 334,758 + Synpcc7942_0339 0.71 -0.9 334,765 + Synpcc7942_0339 0.71 +0.4 334,790 + Synpcc7942_0339 0.74 +2.4 334,821 - Synpcc7942_0339 0.76 +1.3
Or see this region's nucleotide sequence