Experiment: BG11 with Chloride 0.48828125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0166 and tRNA-Met are separated by 95 nucleotides tRNA-Met and Synpcc7942_0167 are separated by 86 nucleotides Synpcc7942_0167 and Synpcc7942_0168 are separated by 139 nucleotides
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Synpcc7942_R0028: tRNA-Met - tRNA-Met, at 166,532 to 166,608
tRNA-Met
Synpcc7942_0167: Synpcc7942_0167 - hypothetical protein, at 166,695 to 166,925
_0167
Synpcc7942_0168: Synpcc7942_0168 - hypothetical protein, at 167,065 to 167,748
_0168
Position (kb) 166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166 at 166.021 kb on + strand, within Synpcc7942_0166 at 166.029 kb on + strand, within Synpcc7942_0166 at 166.067 kb on + strand, within Synpcc7942_0166 at 166.075 kb on - strand, within Synpcc7942_0166 at 166.087 kb on - strand, within Synpcc7942_0166 at 166.104 kb on - strand, within Synpcc7942_0166 at 166.121 kb on + strand, within Synpcc7942_0166 at 166.157 kb on + strand, within Synpcc7942_0166 at 166.173 kb on + strand, within Synpcc7942_0166 at 166.184 kb on + strand, within Synpcc7942_0166 at 166.227 kb on + strand, within Synpcc7942_0166 at 166.247 kb on - strand, within Synpcc7942_0166 at 166.252 kb on - strand, within Synpcc7942_0166 at 166.254 kb on + strand, within Synpcc7942_0166 at 166.274 kb on + strand, within Synpcc7942_0166 at 166.369 kb on - strand at 166.376 kb on + strand at 166.383 kb on + strand at 166.384 kb on + strand at 166.419 kb on + strand at 166.425 kb on + strand at 166.427 kb on - strand at 166.433 kb on - strand at 166.438 kb on - strand at 166.662 kb on - strand at 166.677 kb on - strand at 166.690 kb on + strand at 166.692 kb on + strand at 166.700 kb on - strand at 166.720 kb on + strand, within Synpcc7942_0167 at 166.720 kb on + strand, within Synpcc7942_0167 at 166.728 kb on - strand, within Synpcc7942_0167 at 166.738 kb on - strand, within Synpcc7942_0167 at 166.784 kb on - strand, within Synpcc7942_0167 at 166.837 kb on + strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.871 kb on + strand, within Synpcc7942_0167 at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.935 kb on - strand at 166.935 kb on - strand at 166.949 kb on + strand at 166.949 kb on + strand at 166.954 kb on + strand at 166.962 kb on - strand at 166.972 kb on - strand at 166.979 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.022 kb on + strand at 167.023 kb on - strand at 167.033 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.085 kb on + strand at 167.085 kb on + strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.093 kb on - strand at 167.093 kb on - strand at 167.163 kb on - strand, within Synpcc7942_0168 at 167.178 kb on + strand, within Synpcc7942_0168 at 167.185 kb on - strand, within Synpcc7942_0168 at 167.205 kb on + strand, within Synpcc7942_0168 at 167.224 kb on - strand, within Synpcc7942_0168 at 167.241 kb on + strand, within Synpcc7942_0168 at 167.249 kb on + strand, within Synpcc7942_0168 at 167.249 kb on - strand, within Synpcc7942_0168 at 167.257 kb on - strand, within Synpcc7942_0168 at 167.278 kb on - strand, within Synpcc7942_0168 at 167.285 kb on + strand, within Synpcc7942_0168 at 167.312 kb on + strand at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.425 kb on + strand, within Synpcc7942_0168 at 167.432 kb on + strand, within Synpcc7942_0168 at 167.437 kb on + strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.485 kb on + strand, within Synpcc7942_0168 at 167.493 kb on - strand, within Synpcc7942_0168 at 167.509 kb on + strand, within Synpcc7942_0168 at 167.519 kb on - strand, within Synpcc7942_0168 at 167.570 kb on + strand, within Synpcc7942_0168 at 167.594 kb on + strand, within Synpcc7942_0168 at 167.603 kb on - strand, within Synpcc7942_0168 at 167.611 kb on + strand, within Synpcc7942_0168 at 167.614 kb on + strand, within Synpcc7942_0168 at 167.657 kb on + strand, within Synpcc7942_0168 at 167.657 kb on + strand, within Synpcc7942_0168 at 167.665 kb on - strand, within Synpcc7942_0168 at 167.670 kb on - strand, within Synpcc7942_0168 at 167.682 kb on - strand at 167.689 kb on + strand at 167.690 kb on - strand at 167.758 kb on + strand at 167.771 kb on - strand at 167.792 kb on - strand at 167.826 kb on - strand at 167.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 0.48828125 mM remove 165,697 + Synpcc7942_0166 0.22 +0.5 165,697 + Synpcc7942_0166 0.22 -0.6 165,705 - Synpcc7942_0166 0.23 -0.5 165,820 + Synpcc7942_0166 0.35 -0.9 165,834 - Synpcc7942_0166 0.37 -0.4 165,839 + Synpcc7942_0166 0.37 -0.3 165,846 + Synpcc7942_0166 0.38 +0.2 165,846 + Synpcc7942_0166 0.38 -0.3 165,852 + Synpcc7942_0166 0.39 +0.1 165,852 + Synpcc7942_0166 0.39 -1.9 165,852 + Synpcc7942_0166 0.39 -1.8 165,852 - Synpcc7942_0166 0.39 -0.0 165,855 - Synpcc7942_0166 0.39 -0.6 165,860 - Synpcc7942_0166 0.40 -2.2 165,892 + Synpcc7942_0166 0.43 +0.6 165,905 + Synpcc7942_0166 0.44 +1.8 166,021 + Synpcc7942_0166 0.56 +0.1 166,029 + Synpcc7942_0166 0.57 -0.8 166,067 + Synpcc7942_0166 0.61 -0.5 166,075 - Synpcc7942_0166 0.62 +0.1 166,087 - Synpcc7942_0166 0.63 +1.0 166,104 - Synpcc7942_0166 0.65 +1.4 166,121 + Synpcc7942_0166 0.67 +0.4 166,157 + Synpcc7942_0166 0.71 -1.5 166,173 + Synpcc7942_0166 0.72 +0.1 166,184 + Synpcc7942_0166 0.73 -1.0 166,227 + Synpcc7942_0166 0.78 -0.2 166,247 - Synpcc7942_0166 0.80 -1.1 166,252 - Synpcc7942_0166 0.81 +1.8 166,254 + Synpcc7942_0166 0.81 +0.7 166,274 + Synpcc7942_0166 0.83 -0.2 166,369 - -0.3 166,376 + -0.6 166,383 + +0.8 166,384 + -1.3 166,419 + -0.6 166,425 + -0.5 166,427 - -1.3 166,433 - -1.9 166,438 - -0.8 166,662 - -2.6 166,677 - -0.3 166,690 + +0.1 166,692 + -1.2 166,700 - -0.5 166,720 + Synpcc7942_0167 0.11 -1.2 166,720 + Synpcc7942_0167 0.11 -1.3 166,728 - Synpcc7942_0167 0.14 -0.3 166,738 - Synpcc7942_0167 0.19 -0.9 166,784 - Synpcc7942_0167 0.39 -0.2 166,837 + Synpcc7942_0167 0.61 -3.7 166,845 - Synpcc7942_0167 0.65 +0.8 166,845 - Synpcc7942_0167 0.65 -1.1 166,871 + Synpcc7942_0167 0.76 -3.0 166,927 + -1.5 166,927 + -0.1 166,927 + -0.3 166,935 - -0.8 166,935 - -0.4 166,949 + +2.0 166,949 + -0.3 166,954 + -2.4 166,962 - +0.2 166,972 - +0.4 166,979 - +0.3 167,005 + -1.5 167,005 + +1.4 167,005 + +0.1 167,005 + -0.6 167,005 + +2.4 167,005 + -2.9 167,013 - +1.2 167,013 - -1.4 167,013 - +1.4 167,013 - +1.2 167,022 + +0.4 167,023 - -1.5 167,033 + +0.8 167,080 + +5.7 167,080 + +4.9 167,080 + +5.8 167,080 + +7.6 167,080 + +4.9 167,080 + +5.9 167,080 + +5.5 167,085 + +6.3 167,085 + +5.4 167,088 - +4.2 167,088 - +5.8 167,088 - +6.7 167,088 - +6.9 167,093 - +6.3 167,093 - +5.6 167,163 - Synpcc7942_0168 0.14 +5.0 167,178 + Synpcc7942_0168 0.17 +5.5 167,185 - Synpcc7942_0168 0.18 +4.7 167,205 + Synpcc7942_0168 0.20 +5.7 167,224 - Synpcc7942_0168 0.23 +4.8 167,241 + Synpcc7942_0168 0.26 +5.2 167,249 + Synpcc7942_0168 0.27 +3.6 167,249 - Synpcc7942_0168 0.27 +5.4 167,257 - Synpcc7942_0168 0.28 +5.3 167,278 - Synpcc7942_0168 0.31 +4.7 167,285 + Synpcc7942_0168 0.32 +6.0 167,312 + +7.4 167,340 + Synpcc7942_0168 0.40 +4.9 167,340 + Synpcc7942_0168 0.40 +4.4 167,340 + Synpcc7942_0168 0.40 +5.3 167,380 - Synpcc7942_0168 0.46 +5.7 167,380 - Synpcc7942_0168 0.46 +5.4 167,425 + Synpcc7942_0168 0.53 +4.5 167,432 + Synpcc7942_0168 0.54 +6.1 167,437 + Synpcc7942_0168 0.54 +4.5 167,440 - Synpcc7942_0168 0.55 +6.5 167,440 - Synpcc7942_0168 0.55 +5.2 167,440 - Synpcc7942_0168 0.55 +4.8 167,485 + Synpcc7942_0168 0.61 +4.0 167,493 - Synpcc7942_0168 0.63 +5.0 167,509 + Synpcc7942_0168 0.65 +5.8 167,519 - Synpcc7942_0168 0.66 +5.6 167,570 + Synpcc7942_0168 0.74 +1.6 167,594 + Synpcc7942_0168 0.77 +6.2 167,603 - Synpcc7942_0168 0.79 +5.0 167,611 + Synpcc7942_0168 0.80 +6.5 167,614 + Synpcc7942_0168 0.80 +2.7 167,657 + Synpcc7942_0168 0.87 +1.4 167,657 + Synpcc7942_0168 0.87 +0.6 167,665 - Synpcc7942_0168 0.88 -0.7 167,670 - Synpcc7942_0168 0.88 -0.6 167,682 - +2.1 167,689 + +0.1 167,690 - +1.3 167,758 + +0.3 167,771 - +0.6 167,792 - +0.7 167,826 - -0.4 167,844 - -0.1
Or see this region's nucleotide sequence