Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS22225

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS22220 and RALBFv3_RS22225 are separated by 35 nucleotidesRALBFv3_RS22225 and RALBFv3_RS22230 are separated by 278 nucleotides RALBFv3_RS22220: RALBFv3_RS22220 - methyl-accepting chemotaxis protein, at 1,727,162 to 1,728,751 _RS22220 RALBFv3_RS22225: RALBFv3_RS22225 - sensor domain-containing diguanylate cyclase, at 1,728,787 to 1,732,323 _RS22225 RALBFv3_RS22230: RALBFv3_RS22230 - histidine kinase, at 1,732,602 to 1,735,052 _RS22230 Position (kb) 1728 1729 1730 1731 1732 1733Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1728.857 kb on + strandat 1728.857 kb on + strandat 1728.857 kb on + strandat 1728.857 kb on + strandat 1728.858 kb on - strandat 1728.858 kb on - strandat 1728.858 kb on - strandat 1728.858 kb on - strandat 1728.858 kb on - strandat 1728.858 kb on - strandat 1728.860 kb on + strandat 1728.860 kb on + strandat 1728.860 kb on + strandat 1728.861 kb on - strandat 1728.861 kb on - strandat 1728.861 kb on - strandat 1729.064 kb on + strandat 1729.065 kb on - strandat 1729.079 kb on + strandat 1729.080 kb on - strandat 1729.280 kb on - strand, within RALBFv3_RS22225at 1729.280 kb on - strand, within RALBFv3_RS22225at 1729.508 kb on + strand, within RALBFv3_RS22225at 1729.509 kb on - strand, within RALBFv3_RS22225at 1729.509 kb on - strand, within RALBFv3_RS22225at 1729.509 kb on - strand, within RALBFv3_RS22225at 1729.509 kb on - strand, within RALBFv3_RS22225at 1729.572 kb on - strand, within RALBFv3_RS22225at 1729.640 kb on + strand, within RALBFv3_RS22225at 1729.640 kb on + strand, within RALBFv3_RS22225at 1729.640 kb on + strand, within RALBFv3_RS22225at 1729.641 kb on - strand, within RALBFv3_RS22225at 1729.641 kb on - strand, within RALBFv3_RS22225at 1729.970 kb on + strand, within RALBFv3_RS22225at 1729.970 kb on + strand, within RALBFv3_RS22225at 1729.970 kb on + strand, within RALBFv3_RS22225at 1729.971 kb on - strand, within RALBFv3_RS22225at 1729.971 kb on - strand, within RALBFv3_RS22225at 1729.971 kb on - strand, within RALBFv3_RS22225at 1729.971 kb on - strandat 1729.971 kb on - strand, within RALBFv3_RS22225at 1729.971 kb on - strand, within RALBFv3_RS22225at 1730.132 kb on + strand, within RALBFv3_RS22225at 1730.132 kb on + strand, within RALBFv3_RS22225at 1730.132 kb on + strand, within RALBFv3_RS22225at 1730.133 kb on - strand, within RALBFv3_RS22225at 1730.372 kb on + strand, within RALBFv3_RS22225at 1730.372 kb on + strand, within RALBFv3_RS22225at 1730.372 kb on + strand, within RALBFv3_RS22225at 1730.606 kb on + strand, within RALBFv3_RS22225at 1730.607 kb on - strand, within RALBFv3_RS22225at 1730.657 kb on + strand, within RALBFv3_RS22225at 1730.657 kb on + strand, within RALBFv3_RS22225at 1730.657 kb on + strand, within RALBFv3_RS22225at 1730.657 kb on + strand, within RALBFv3_RS22225at 1730.658 kb on - strand, within RALBFv3_RS22225at 1730.658 kb on - strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.732 kb on + strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1730.733 kb on - strand, within RALBFv3_RS22225at 1731.363 kb on - strand, within RALBFv3_RS22225at 1731.579 kb on - strand, within RALBFv3_RS22225at 1731.734 kb on + strand, within RALBFv3_RS22225at 1731.735 kb on - strand, within RALBFv3_RS22225at 1731.946 kb on - strand, within RALBFv3_RS22225at 1732.374 kb on + strandat 1732.549 kb on - strandat 1732.588 kb on + strandat 1732.588 kb on + strandat 1732.589 kb on - strandat 1732.589 kb on - strandat 1732.722 kb on + strandat 1732.722 kb on + strandat 1732.722 kb on + strandat 1732.723 kb on - strandat 1732.723 kb on - strandat 1733.041 kb on - strand, within RALBFv3_RS22230at 1733.042 kb on + strand, within RALBFv3_RS22230at 1733.043 kb on - strand, within RALBFv3_RS22230at 1733.043 kb on - strand, within RALBFv3_RS22230at 1733.099 kb on - strand, within RALBFv3_RS22230at 1733.099 kb on - strand, within RALBFv3_RS22230at 1733.204 kb on + strand, within RALBFv3_RS22230at 1733.204 kb on + strand, within RALBFv3_RS22230at 1733.205 kb on - strand, within RALBFv3_RS22230at 1733.242 kb on - strand, within RALBFv3_RS22230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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1,728,857 + -0.3
1,728,857 + -0.3
1,728,857 + +1.9
1,728,857 + +1.3
1,728,858 - +0.8
1,728,858 - +1.0
1,728,858 - -0.5
1,728,858 - +1.1
1,728,858 - +4.2
1,728,858 - -0.5
1,728,860 + -1.0
1,728,860 + -0.1
1,728,860 + +0.2
1,728,861 - +3.5
1,728,861 - +0.4
1,728,861 - +0.3
1,729,064 + -0.4
1,729,065 - +0.6
1,729,079 + -0.8
1,729,080 - -0.4
1,729,280 - RALBFv3_RS22225 0.14 +0.1
1,729,280 - RALBFv3_RS22225 0.14 -0.3
1,729,508 + RALBFv3_RS22225 0.20 -0.6
1,729,509 - RALBFv3_RS22225 0.20 -1.0
1,729,509 - RALBFv3_RS22225 0.20 -0.7
1,729,509 - RALBFv3_RS22225 0.20 +2.4
1,729,509 - RALBFv3_RS22225 0.20 +1.4
1,729,572 - RALBFv3_RS22225 0.22 -0.6
1,729,640 + RALBFv3_RS22225 0.24 +0.9
1,729,640 + RALBFv3_RS22225 0.24 -1.0
1,729,640 + RALBFv3_RS22225 0.24 +4.7
1,729,641 - RALBFv3_RS22225 0.24 +1.1
1,729,641 - RALBFv3_RS22225 0.24 -1.1
1,729,970 + RALBFv3_RS22225 0.33 -0.2
1,729,970 + RALBFv3_RS22225 0.33 +0.9
1,729,970 + RALBFv3_RS22225 0.33 -0.2
1,729,971 - RALBFv3_RS22225 0.33 +5.9
1,729,971 - RALBFv3_RS22225 0.33 -0.2
1,729,971 - RALBFv3_RS22225 0.33 +0.2
1,729,971 - +3.4
1,729,971 - RALBFv3_RS22225 0.33 +0.9
1,729,971 - RALBFv3_RS22225 0.33 +5.0
1,730,132 + RALBFv3_RS22225 0.38 -0.2
1,730,132 + RALBFv3_RS22225 0.38 -0.3
1,730,132 + RALBFv3_RS22225 0.38 +0.7
1,730,133 - RALBFv3_RS22225 0.38 -0.3
1,730,372 + RALBFv3_RS22225 0.45 +3.7
1,730,372 + RALBFv3_RS22225 0.45 +0.4
1,730,372 + RALBFv3_RS22225 0.45 -0.6
1,730,606 + RALBFv3_RS22225 0.51 +0.6
1,730,607 - RALBFv3_RS22225 0.51 +0.4
1,730,657 + RALBFv3_RS22225 0.53 -0.9
1,730,657 + RALBFv3_RS22225 0.53 +0.5
1,730,657 + RALBFv3_RS22225 0.53 +0.2
1,730,657 + RALBFv3_RS22225 0.53 +3.7
1,730,658 - RALBFv3_RS22225 0.53 -0.1
1,730,658 - RALBFv3_RS22225 0.53 +3.4
1,730,732 + RALBFv3_RS22225 0.55 +0.8
1,730,732 + RALBFv3_RS22225 0.55 -2.6
1,730,732 + RALBFv3_RS22225 0.55 -0.1
1,730,732 + RALBFv3_RS22225 0.55 +0.1
1,730,732 + RALBFv3_RS22225 0.55 -0.7
1,730,732 + RALBFv3_RS22225 0.55 +0.1
1,730,732 + RALBFv3_RS22225 0.55 -0.1
1,730,732 + RALBFv3_RS22225 0.55 -0.8
1,730,733 - RALBFv3_RS22225 0.55 +0.5
1,730,733 - RALBFv3_RS22225 0.55 +0.3
1,730,733 - RALBFv3_RS22225 0.55 +0.6
1,730,733 - RALBFv3_RS22225 0.55 +0.0
1,730,733 - RALBFv3_RS22225 0.55 -0.6
1,730,733 - RALBFv3_RS22225 0.55 +0.5
1,730,733 - RALBFv3_RS22225 0.55 +1.0
1,730,733 - RALBFv3_RS22225 0.55 +0.7
1,730,733 - RALBFv3_RS22225 0.55 -0.6
1,730,733 - RALBFv3_RS22225 0.55 +2.2
1,730,733 - RALBFv3_RS22225 0.55 +0.9
1,730,733 - RALBFv3_RS22225 0.55 +0.4
1,730,733 - RALBFv3_RS22225 0.55 +0.1
1,730,733 - RALBFv3_RS22225 0.55 -0.3
1,730,733 - RALBFv3_RS22225 0.55 +5.0
1,730,733 - RALBFv3_RS22225 0.55 +4.4
1,730,733 - RALBFv3_RS22225 0.55 +3.4
1,730,733 - RALBFv3_RS22225 0.55 +0.3
1,730,733 - RALBFv3_RS22225 0.55 +2.7
1,730,733 - RALBFv3_RS22225 0.55 -2.0
1,730,733 - RALBFv3_RS22225 0.55 +4.1
1,731,363 - RALBFv3_RS22225 0.73 -0.4
1,731,579 - RALBFv3_RS22225 0.79 +1.8
1,731,734 + RALBFv3_RS22225 0.83 +0.2
1,731,735 - RALBFv3_RS22225 0.83 +0.4
1,731,946 - RALBFv3_RS22225 0.89 +1.4
1,732,374 + -0.4
1,732,549 - -1.6
1,732,588 + -0.5
1,732,588 + -0.2
1,732,589 - -0.7
1,732,589 - -0.3
1,732,722 + -0.1
1,732,722 + -1.1
1,732,722 + +1.6
1,732,723 - -0.9
1,732,723 - +0.6
1,733,041 - RALBFv3_RS22230 0.18 +0.5
1,733,042 + RALBFv3_RS22230 0.18 -1.1
1,733,043 - RALBFv3_RS22230 0.18 -1.4
1,733,043 - RALBFv3_RS22230 0.18 +4.0
1,733,099 - RALBFv3_RS22230 0.20 +0.4
1,733,099 - RALBFv3_RS22230 0.20 +1.9
1,733,204 + RALBFv3_RS22230 0.25 +1.7
1,733,204 + RALBFv3_RS22230 0.25 -1.1
1,733,205 - RALBFv3_RS22230 0.25 -0.7
1,733,242 - RALBFv3_RS22230 0.26 +1.9

Or see this region's nucleotide sequence