Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS11245

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS11240 and RALBFv3_RS11245 are separated by 49 nucleotidesRALBFv3_RS11245 and RALBFv3_RS23945 are separated by 62 nucleotides RALBFv3_RS11240: RALBFv3_RS11240 - MFS transporter, at 2,478,800 to 2,479,963 _RS11240 RALBFv3_RS11245: RALBFv3_RS11245 - single-stranded DNA-binding protein, at 2,480,013 to 2,480,549 _RS11245 RALBFv3_RS23945: RALBFv3_RS23945 - IS5/IS1182 family transposase, at 2,480,612 to 2,481,417 _RS23945 Position (kb) 2480 2481Strain fitness (log2 ratio) -1 0 1 2 3at 2479.529 kb on + strand, within RALBFv3_RS11240at 2479.529 kb on + strand, within RALBFv3_RS11240at 2479.707 kb on - strand, within RALBFv3_RS11240at 2479.760 kb on + strand, within RALBFv3_RS11240at 2479.799 kb on + strand, within RALBFv3_RS11240at 2479.800 kb on - strand, within RALBFv3_RS11240at 2479.800 kb on - strand, within RALBFv3_RS11240at 2479.919 kb on - strandat 2479.991 kb on + strandat 2479.995 kb on + strandat 2480.605 kb on - strandat 2481.425 kb on + strandat 2481.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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2,479,529 + RALBFv3_RS11240 0.63 +2.9
2,479,529 + RALBFv3_RS11240 0.63 +1.6
2,479,707 - RALBFv3_RS11240 0.78 +0.3
2,479,760 + RALBFv3_RS11240 0.82 +0.5
2,479,799 + RALBFv3_RS11240 0.86 -0.6
2,479,800 - RALBFv3_RS11240 0.86 -1.2
2,479,800 - RALBFv3_RS11240 0.86 +0.9
2,479,919 - -0.3
2,479,991 + -1.2
2,479,995 + +0.8
2,480,605 - -0.1
2,481,425 + -0.2
2,481,533 - -1.2

Or see this region's nucleotide sequence