Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05500 and RALBFv3_RS05505 are separated by 52 nucleotides RALBFv3_RS05505 and RALBFv3_RS05510 overlap by 4 nucleotides RALBFv3_RS05510 and RALBFv3_RS05515 are separated by 163 nucleotides RALBFv3_RS05515 and RALBFv3_RS05520 are separated by 60 nucleotides
RALBFv3_RS05500: RALBFv3_RS05500 - glycolate oxidase iron-sulfur subunit, at 1,219,596 to 1,220,843
_RS05500
RALBFv3_RS05505: RALBFv3_RS05505 - CidA/LrgA family protein, at 1,220,896 to 1,221,273
_RS05505
RALBFv3_RS05510: RALBFv3_RS05510 - LrgB family protein, at 1,221,270 to 1,222,001
_RS05510
RALBFv3_RS05515: RALBFv3_RS05515 - VOC family protein, at 1,222,165 to 1,222,560
_RS05515
RALBFv3_RS05520: RALBFv3_RS05520 - cupin domain-containing protein, at 1,222,621 to 1,223,100
_RS05520
Position (kb) 1221
1222
1223 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1220.382 kb on + strand, within RALBFv3_RS05500 at 1220.383 kb on - strand, within RALBFv3_RS05500 at 1220.383 kb on - strand, within RALBFv3_RS05500 at 1220.434 kb on + strand, within RALBFv3_RS05500 at 1220.662 kb on - strand, within RALBFv3_RS05500 at 1220.662 kb on - strand, within RALBFv3_RS05500 at 1220.741 kb on + strand at 1220.741 kb on + strand at 1220.742 kb on - strand at 1220.742 kb on - strand at 1220.954 kb on - strand, within RALBFv3_RS05505 at 1221.010 kb on + strand, within RALBFv3_RS05505 at 1221.011 kb on - strand, within RALBFv3_RS05505 at 1221.011 kb on - strand, within RALBFv3_RS05505 at 1221.309 kb on + strand at 1221.310 kb on - strand at 1221.357 kb on + strand, within RALBFv3_RS05510 at 1221.357 kb on + strand, within RALBFv3_RS05510 at 1221.378 kb on + strand, within RALBFv3_RS05510 at 1221.378 kb on + strand, within RALBFv3_RS05510 at 1221.469 kb on - strand, within RALBFv3_RS05510 at 1221.477 kb on + strand, within RALBFv3_RS05510 at 1221.477 kb on + strand, within RALBFv3_RS05510 at 1221.477 kb on + strand, within RALBFv3_RS05510 at 1221.834 kb on + strand, within RALBFv3_RS05510 at 1221.835 kb on - strand, within RALBFv3_RS05510 at 1222.228 kb on + strand, within RALBFv3_RS05515 at 1222.255 kb on - strand, within RALBFv3_RS05515 at 1222.681 kb on + strand, within RALBFv3_RS05520 at 1222.682 kb on - strand, within RALBFv3_RS05520 at 1222.834 kb on + strand, within RALBFv3_RS05520 at 1222.834 kb on + strand, within RALBFv3_RS05520 at 1222.834 kb on + strand, within RALBFv3_RS05520 at 1222.834 kb on + strand, within RALBFv3_RS05520 at 1222.834 kb on + strand, within RALBFv3_RS05520 at 1222.879 kb on + strand, within RALBFv3_RS05520 at 1222.879 kb on + strand, within RALBFv3_RS05520 at 1222.880 kb on - strand, within RALBFv3_RS05520 at 1222.880 kb on - strand, within RALBFv3_RS05520 at 1222.963 kb on + strand, within RALBFv3_RS05520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 1,220,382 + RALBFv3_RS05500 0.63 -0.9 1,220,383 - RALBFv3_RS05500 0.63 +0.5 1,220,383 - RALBFv3_RS05500 0.63 +0.6 1,220,434 + RALBFv3_RS05500 0.67 -1.2 1,220,662 - RALBFv3_RS05500 0.85 -0.5 1,220,662 - RALBFv3_RS05500 0.85 -1.5 1,220,741 + +0.9 1,220,741 + +4.1 1,220,742 - -1.5 1,220,742 - +0.4 1,220,954 - RALBFv3_RS05505 0.15 +1.0 1,221,010 + RALBFv3_RS05505 0.30 -1.4 1,221,011 - RALBFv3_RS05505 0.30 -0.2 1,221,011 - RALBFv3_RS05505 0.30 -0.5 1,221,309 + +0.3 1,221,310 - +0.3 1,221,357 + RALBFv3_RS05510 0.12 -0.3 1,221,357 + RALBFv3_RS05510 0.12 +0.3 1,221,378 + RALBFv3_RS05510 0.15 -0.2 1,221,378 + RALBFv3_RS05510 0.15 -1.1 1,221,469 - RALBFv3_RS05510 0.27 -0.9 1,221,477 + RALBFv3_RS05510 0.28 +1.1 1,221,477 + RALBFv3_RS05510 0.28 -1.2 1,221,477 + RALBFv3_RS05510 0.28 +0.9 1,221,834 + RALBFv3_RS05510 0.77 -0.1 1,221,835 - RALBFv3_RS05510 0.77 +0.1 1,222,228 + RALBFv3_RS05515 0.16 -1.2 1,222,255 - RALBFv3_RS05515 0.23 +2.0 1,222,681 + RALBFv3_RS05520 0.12 -0.8 1,222,682 - RALBFv3_RS05520 0.13 -0.3 1,222,834 + RALBFv3_RS05520 0.44 +0.5 1,222,834 + RALBFv3_RS05520 0.44 +3.8 1,222,834 + RALBFv3_RS05520 0.44 +1.2 1,222,834 + RALBFv3_RS05520 0.44 +0.6 1,222,834 + RALBFv3_RS05520 0.44 -1.2 1,222,879 + RALBFv3_RS05520 0.54 -1.0 1,222,879 + RALBFv3_RS05520 0.54 -0.7 1,222,880 - RALBFv3_RS05520 0.54 -0.2 1,222,880 - RALBFv3_RS05520 0.54 +2.1 1,222,963 + RALBFv3_RS05520 0.71 -1.4
Or see this region's nucleotide sequence